Clavibacter capsici: AES38_03525
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Entry
AES38_03525 CDS
T05227
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccap
Clavibacter capsici
Pathway
ccap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AES38_03525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccap03019
]
AES38_03525
03400 DNA repair and recombination proteins [BR:
ccap03400
]
AES38_03525
Enzymes [BR:
ccap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AES38_03525
Messenger RNA biogenesis [BR:
ccap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AES38_03525
DNA repair and recombination proteins [BR:
ccap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AES38_03525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALD12125
UniProt:
A0A0M3RQT6
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All DBs
Position
704623..706497
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AA seq
624 aa
AA seq
DB search
MTSTPPAPAGSPALAPALERLGTVFGYDAFRGDQQEIVEHVIGGGDALVLMPTGGGKSLC
YQIPSLVREGTGVVISPLIALMQDQVDALRAVGVRAAFLNSTQDLETSREVERALLDGDL
DLLYLAPERLILDRMGRLLDEARIALFAIDEAHCVSQWGHDFRKDYLALSMLQERWPEVP
RIALTATANEATHADITARLGLQDARHFVSSFDRPNIRYRIVPKAEPRKQLVDLIRNEHA
GDAGIVYCLSRKTVEQTAEALNKQGITALPYHAGLDAAVRQRNQARFLREDGIVMCATIA
FGMGIDKPDVRFVAHIDLPKSIEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRRMIDQS
EGDAQHRRRLSQHLDAMLALCETVGCRRVQLLRYFGEETGPCGNCDTCLEPVETWDATVP
SQKLLSTIVRLQRERGQRFGAAHLIDILLGNATDRVRQQGHDQLATFGIGTELTDVQWRG
VVRQLLAQGLLGVSDDGYGTLVITAGSGDVLTGSRQVPMRQEPERIVRGRGTRTTRAKGG
QVVDLPEEAQGLFEALRAWRSEQAKEQGVPAYVVFADVTLREVATVRPQDLGQLAGITGV
GQKKLDTYGEGLLAVVAAGSDAAG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacctccacccctcccgctccggccggatcccccgcgctcgcacccgccctcgagcgc
ctcggcaccgtcttcgggtacgacgccttccggggcgaccagcaggagatcgtcgagcac
gtcatcggcggcggcgacgcgctggtgctcatgcccacgggcggtggcaagtcgctctgc
taccagatcccgagcctcgtccgcgagggcacgggcgtggtcatctcgccgctcatcgcg
ctcatgcaggaccaggtcgacgccctccgcgccgtcggcgtgcgggccgcgttcctcaac
tccacgcaggacctcgagaccagccgcgaggtcgagcgcgccctgctcgacggcgacctc
gacctgctctacctcgcgcccgagcgcctcatcctcgaccggatggggcgcctcctcgac
gaggcgcgcatcgccctcttcgccatcgacgaggcgcactgcgtctcccagtggggccac
gacttccgcaaggactacctcgcgctgtccatgctccaggagcgctggcccgaggtcccg
cgcatcgcgctcaccgccacggccaacgaggccacgcacgccgacatcacggcgcgcctc
ggcctccaggacgcgcgccacttcgtctcctccttcgaccggccgaacatccgctaccgc
atcgtgcccaaggccgagccgcgcaagcagctggtcgacctcatccggaacgagcacgcg
ggcgacgccggcatcgtctactgcctgagccggaagaccgtggagcagacggccgaggcg
ctgaacaagcaggggatcaccgcgctgccgtaccacgcgggcctcgacgccgccgtgcgc
cagcgcaaccaggcgcgcttcctccgcgaggacggcatcgtcatgtgcgccaccatcgcg
ttcggcatggggatagacaagccggacgtgcgcttcgtcgcccacatcgacctgccgaag
tccatcgagggctactaccaggagaccggtcgcgcgggccgcgacggcctcccgtccacc
gcctggctcgcctacggcctgcaggacgtggtgcagcagcgccgcatgatcgaccagtcc
gagggcgacgcgcagcaccgccgccggctgtcgcagcacctcgacgcgatgctcgcgctg
tgcgagaccgtcggctgccgccgcgtgcagctcctccgctacttcggcgaggagacgggt
ccctgcggcaactgcgacacctgcctcgagccggtcgagacgtgggacgcgacggtgccg
tcgcagaagctcctgtccaccatcgtgcggctgcagcgtgagcgcggccagcgcttcggg
gccgcgcacctcatcgacatcctgctcggcaatgcgaccgaccgcgtgcgccagcagggg
cacgaccagctcgccaccttcggcatcggcaccgagctcaccgacgtgcagtggcgcggc
gtcgtccgccagctgctcgcgcagggcctcctcggcgtgagcgacgacggctacggcacc
ctcgtcatcacggcgggcagcggcgacgtgctcaccggatcccgccaggtgcccatgcgg
caggagcccgagcgcatcgtgcgcggccgcggcacgcgcaccacccgggccaagggcggc
caggtcgtcgacctgcccgaggaggcgcagggcctgttcgaggccctccgcgcgtggcgc
tcggagcaggcgaaggagcagggcgtgcccgcgtacgtcgtgttcgccgacgtcacgctg
cgcgaggtcgccaccgtgcgcccgcaggatctcgggcagctcgccggcatcacgggcgtc
ggccagaagaagctcgacacctacggcgaggggctcctcgcggtggtcgccgcgggatcc
gacgccgccgggtag
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