Clavibacter capsici: AES38_05370
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Entry
AES38_05370 CDS
T05227
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccap
Clavibacter capsici
Pathway
ccap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AES38_05370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccap03021
]
AES38_05370
03019 Messenger RNA biogenesis [BR:
ccap03019
]
AES38_05370
Transcription machinery [BR:
ccap03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AES38_05370
Messenger RNA biogenesis [BR:
ccap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AES38_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
HeH
NACHT
SAP
CoV_NSP2_C
Motif
Other DBs
NCBI-ProteinID:
ALD12433
UniProt:
A0AAE7CBR1
LinkDB
All DBs
Position
1120849..1123290
Genome browser
AA seq
813 aa
AA seq
DB search
MTDVDTRASDADLSTLRVSQLQAIASELGIPGGSKLRKGELVTAISEIRAARGLSASTEE
TAPASDAPTEVADAPVEDAAPVEAPAAPVADAAPVEAPAAPVADADPVEAPAPVEAPAAD
EAPAEQPARSGRGSRRATTPRIVPERIEEPVEAPAAVEPAGTGLEARIAQATGGRAASSR
AQAPRADEARTEAPAGRRGSRRATSAGVVDPAAEAPRQAAQHVNSGQTADQLVPAEAEAP
AADASTEEQAPQQRSGRGRRRGGRDAQDGAAQDAPAETAADEAPAASDAQSSGDDRDRDS
DDQGGRDGREGREGGRNRSRNRRNRDRDRGRDQDDQQQGGRDQAPREQDADEEAQEEART
GRQRQNGRGQGDRQQDVRADQARADLGRDEERGGRSRYRDRKRGRGQGGDDFEPEVTEDD
VLLPVAGILDVLDNYAFVRTSGYLPGTNDVYVSLGQVKKHSLRKGDAIVGAIRQPRENDS
QSRQKYNAIVKIDSVNGLPPEEAANRVEFGKLTPLYPQDRLSLETEPNKLTTRIIDLVSP
IGKGQRGLIVSPPKAGKTLVLQAIANAIATNNPEVHLMVVLVDERPEEVTDMQRTVKGEV
IASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSG
GVDSSALYPPKRFFGAARNIEHGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSR
ALADKRIFPAVDVNASGTRREEMLMGADEVKVTWKLRRALAGLEQQQALEIVLSRLKETT
SNVEFLMKVQASMPNTANGQSHQSHGHGAHEKG
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcgacacccgcgcctctgacgcggacctgagcacgctccgcgtctcccag
ctccaggccatcgcctccgagctcgggatcccgggcggctccaagctccggaagggcgag
ctcgtgaccgcgatctccgagatccgggcagcccgggggctctccgcctccaccgaggag
acggctcccgcctccgatgcccccaccgaggtcgcggacgcccccgtcgaggacgccgct
cccgtcgaggcgcccgccgccccggtcgcggacgccgcccccgtcgaggcgcccgccgcc
ccggtcgcggacgccgaccccgtcgaggcgcccgcccccgtcgaggcgcccgccgccgac
gaggccccggccgagcagcccgcgcgctccggccgcggatcgcgccgcgccaccaccccg
cgcatcgtgcccgagcgcatcgaggagcccgtcgaggcccccgccgcggtcgagcccgcc
ggcaccggactcgaggcccgcatcgcgcaggccaccggcggccgcgccgcctcctcccgc
gcccaggcgccccgcgccgacgaggcccgcaccgaggcgcccgccggacgccgcggatcg
cgccgcgccaccagcgccggggtcgtggatcccgccgccgaggccccgcgccaggccgcg
cagcacgtgaacagcggccagacggccgaccagctggtccccgccgaggccgaggcgccc
gccgccgacgcgtcgaccgaggagcaggccccgcagcagcgctccggccgcggccgtcgc
cgcggcggacgcgacgcccaggacggcgccgcgcaggacgcgcccgccgagaccgccgcc
gacgaggcgcccgccgcgtcggatgcgcagtcctcgggcgacgaccgcgaccgcgactcc
gacgaccagggcggccgcgacggccgcgagggtcgcgagggcggccgcaaccgcagccgc
aaccgccggaaccgcgaccgcgaccgcggacgcgaccaggacgaccagcagcagggcggc
cgcgaccaggccccgcgcgagcaggacgccgacgaggaggcgcaggaggaggcccgcacg
ggccgccagcgccagaacggccgcggccagggcgaccgccagcaggacgtgcgcgccgac
caggcccgcgccgacctcggacgcgacgaggagcgcggcggacgcagccgctaccgcgac
cgcaagcgcggccgcggccagggcggcgacgacttcgagcccgaggtcaccgaggacgac
gtcctcctgcccgtcgccggcatcctcgacgtgctggacaactacgcgttcgtccgcacg
agcggctacctgcccggcacgaacgacgtctacgtctcgctcggccaggtcaagaagcac
tcgctgcgcaagggcgacgccatcgtcggcgccatccgccagccgcgcgagaacgacagc
cagagccgccagaagtacaacgcgatcgtgaagatcgactcggtcaacggcctgccgccc
gaggaggccgcgaaccgcgtcgagttcggcaagctgacgccgctctacccgcaggaccgc
ctgagcctcgagaccgagcccaacaagctgaccacgcggatcatcgacctcgtgtcgccg
atcggcaagggccagcgcggcctcatcgtctcgccgcccaaggccggcaagacgctcgtg
ctccaggccatcgcgaacgccatcgccaccaacaaccccgaggtccacctcatggtcgtg
ctggtcgacgagcgtcccgaggaggtcaccgacatgcagcgcacggtgaagggcgaggtc
atcgcctccaccttcgaccgtcccgccgaggaccacaccacggtcgccgagctcgccatc
gagcgcgcgaagcgcctcgtggagctcggccacgacgtggtcgtgctgctcgactcgatc
acccgcctcggccgcgcgtacaacctcgcggcccccgcatcgggccggatcctctcgggc
ggcgtcgactcgtcggcgctctacccgccgaagcgcttcttcggcgcggcgcgcaacatc
gagcacggcgggtcgctcacgatcctcgccacggcgctcgtggagaccggatccaagatg
gacgaggtcatcttcgaggagttcaagggcaccggcaacatggagctccgcctctcgcgc
gccctcgccgacaagcggatcttcccggccgtcgacgtcaacgcctccggcacgcgccgc
gaggagatgctcatgggcgccgacgaggtcaaggtcacgtggaagctgcgccgcgccctc
gccgggctcgagcagcagcaggccctcgagatcgtcctcagccgcctgaaggagacgacg
tccaacgtcgagttcctcatgaaggtccaggcctccatgcccaacaccgcgaacggccag
tcccaccagagccacgggcacggcgcgcacgagaagggctga
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