Clavibacter capsici: AES38_08015
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Entry
AES38_08015 CDS
T05227
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ccap
Clavibacter capsici
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccap03016
]
AES38_08015
Enzymes [BR:
ccap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AES38_08015
Transfer RNA biogenesis [BR:
ccap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AES38_08015
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ALD14179
LinkDB
All DBs
Position
complement(1706920..1708161)
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AA seq
413 aa
AA seq
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MPDVPARPALREAAATGDLTVIDTRDEYLRAVEAIAAGIGPIAVDAERASGFRYSQRAYL
IQVFRRGAGTFLFDPPAVGDFSELDAVIRDVEWVLHAASQDLACLREVGLDPRRIFDTEL
ASRLLGLPRVGLGTVVEELLGIHLAKEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEI
ARRLEEQGKTSIAEQEFQATIAKEAKPARVEPWRRLSGLHGVRGGRNLAVAKELWEARDA
YAREVDTSPGRLVPDGSLVAVARVLPQSKRDLAAVREFSGRASRSEIDRWWAAVERGLAA
TEFPQLRGTGETMPPPKAWADKDPAADRRLKRARVVVQEVATSMGVPQENLLTPEVLRRV
AWTPPADLAPEAVAEALASWGARPWQIEATAAPVASAFVDADQADDATDDGAS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
ctgccggacgtccccgcgcggcccgccctccgcgaggcggccgccaccggcgacctcacc
gtcatcgacacgcgcgacgagtacctccgcgccgtggaggccatcgccgccggcatcgga
cccatcgccgtcgacgccgagcgcgcgtccggcttccgctacagccagcgcgcctacctc
atccaggtcttccgccgcggcgccggcacgttcctcttcgacccgcccgcggtcggcgac
ttctcggagctcgatgcggtgatccgcgacgtcgagtgggtcctgcacgccgccagccag
gacctcgcgtgcctgcgcgaggtgggcctcgacccgcggcgcatcttcgacaccgagctc
gcctcgcgcctgctcgggctcccccgtgtgggactcggcaccgtcgtggaggagctgctc
gggatccacctggccaaggagcactcggccgccgactggtccacccgtccgctcccccgc
gcctggctcgtctacgccgcgctcgacgtggagctgctcgtggacgtgcgcgacgagatc
gcccgtcggctcgaggagcagggcaagacctcgatcgccgagcaggagttccaggcgacc
atcgccaaggaggcgaagcccgcgcgcgtcgagccgtggcgccgcctcagcggcctgcac
ggcgtccgcggcggtcgcaacctcgcggtcgcgaaggagctgtgggaggcccgcgacgcg
tacgcgcgcgaggtcgacacgagccccggccgtctcgtccccgacggctcgctcgtcgcc
gtcgcgcgcgtcctgccgcagtccaagcgcgatctggccgcggtccgggagttctcgggc
cgcgcgagccgcagcgagatcgaccgctggtgggccgccgtcgagcgcggcctcgcggcc
accgagttcccgcagctgcgcggcacgggcgagacgatgccgccgccgaaggcctgggcc
gacaaggaccccgccgccgaccgccgcctgaagcgcgcccgcgtcgtcgtccaggaggtc
gcgacctcgatgggcgtcccgcaggagaacctcctcaccccggaggtcctccgccgggtg
gcgtggacgccgcccgccgacctcgcgcccgaggccgtcgcggaggcgctcgcctcctgg
ggcgcgcgcccctggcagatcgaggcgaccgccgctcccgtggcctcggcctttgtcgat
gcggaccaagccgacgacgcgaccgacgacggcgcctcgtag
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