Clavibacter capsici: AES38_12715
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Entry
AES38_12715 CDS
T05227
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccap
Clavibacter capsici
Pathway
ccap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AES38_12715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccap03021
]
AES38_12715
03400 DNA repair and recombination proteins [BR:
ccap03400
]
AES38_12715
Enzymes [BR:
ccap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AES38_12715
Transcription machinery [BR:
ccap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AES38_12715
DNA repair and recombination proteins [BR:
ccap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AES38_12715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALD13661
LinkDB
All DBs
Position
complement(2708283..2712182)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHEDMPGLENELRLEIKTLQDQRDSQIAERLGRLETD
LAALEAEGAKSDQKRRAKDGAEKEMGQTRKAFDEDISRLERVWEEFRSLKVGELKPEDAV
FHELQDRFGIYFEAHMGAEAIQKRLEAFDLEAEGELLREQIATGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLQVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
GQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVAGEGR
AFSSVAEAILAKDQLSLDLNAKVRIRLHDIYFGEGEAPEGVELDEKGKTVGPVLLETTLG
RALFNETLPVDYPYIEAVADKGKLSEIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGV
TVALSDVLTPPTKAAILSGYEKQAAKVQGQFEKGLTTNAERRQELIEIWNKATAEVAKAM
EDNLPADNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYREGLTVAEY
FISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSRGLDLPIAIQAADGT
SVRDSNVENSVYARSLAADAVNEAGEVVAPAGSDVGDVMIDHLIAAGVHEIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRSRKVILTPDNGDEPHVYPVLKRATLLV
EDGQHVELGQQLHVGAIDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVEHGDTDLLPGELVDRARYNEVNRATLTEGKKTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLAKYRDVTVTATEEAK
AERYPNRIFTDESVFNESDLSFVDFDSFSSDDYTPGTYN
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaactttcgatgagctgcggatcggcctcgcgacggccgacgacatc
cgccgctggtcgcacggtgaggtcaagaagcctgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcggacccagccgtgactgggagtgc
tcctgcggcaagtacaagcgggtgcgcttcaagggaatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtccgcggtgcgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtgccctcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatcagcgtggac
gaggacgctcgccacgaggacatgccgggcctcgagaacgagctccggctcgagatcaag
accctgcaggaccagcgcgacagccagatcgcggagcgcctcgggcgcctcgagaccgac
ctggccgcgctggaggccgagggcgccaagagcgaccagaagcgccgcgcgaaggacggc
gccgagaaggagatgggtcagacgcgcaaggcgttcgacgaggacatctcccgtctcgag
cgcgtctgggaggagttccgcagcctcaaggtcggcgagctcaagcccgaggacgccgtc
ttccacgagctgcaggaccgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atccagaagcgcctggaggccttcgacctcgaggccgagggggagctgctccgcgagcag
atcgccaccggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtcgtcagc
tccttcctcgcgacgggcaactcgccggccgcgatggtgctgcaggtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgcctgctggacctc
ggcgctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgcgcgctcaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcatcgtcggaccgcagctcaagctgcaccag
tgcggtctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgagccacgcccagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ggacaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgc
gcgcccacgctccaccgcctgggcatccaggcgttcgagccccagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcctcgaacaacatcctcaagccgtcggacggacgcccggtcaccctgcccacgcaggac
atgatcatcggcctgcaccacctgaccaccctcaaggagggcgtcgccggtgagggtcgc
gcgttcagctcggtggccgaggccatcctggcgaaggaccagctctcgctggacctcaac
gccaaggtgcgcatccgcctgcacgacatctacttcggcgagggcgaggcgcccgagggc
gtcgagctcgacgagaagggcaagacggtcggccccgtgctgctcgagaccaccctcggt
cgcgcgctgttcaacgagaccctgccggtcgactacccgtacatcgaggccgtcgccgac
aagggcaagctctccgagatcgtcaacgacctcgccgagcgctaccccaaggtggaggtc
gcggcagcgctcgaccggatcaaggacgcgggcttctactgggccacgcgctccggcgtc
acggtcgccctctccgacgtgctgaccccgcccaccaaggcggccatcctgtcgggctac
gagaagcaggccgccaaggtccagggccagttcgagaagggcctcacgacgaacgccgag
cgtcgtcaggagctcatcgagatctggaacaaggccaccgccgaggtcgcgaaggcgatg
gaggacaacctccccgccgacaacaacatcaaccgcatggtgtcctccggggcacgaggc
aactggatgcaggtccgccagatcgccggcatgcgcggcctcgtgtcgaacccgaagggc
gagatcatcccccgcccgatcgtccactcgtaccgcgagggcctgacggtggcggagtac
ttcatctccacccacggcgcccgcaagggactggccgacaccgcgctgcgcaccgccgac
tccgggtacctcacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgaggac
gactgcggcacgagccgcggcctcgacctgccgatcgccatccaggcggcggacggcacg
tcggtccgcgactccaacgtggagaactccgtgtacgcccgctcgctggccgccgacgcg
gtcaacgaggccggcgaggtcgtggcccccgcgggcagcgacgtcggcgacgtcatgatc
gaccacctgatcgcggccggcgtgcacgagatcaaggtgcgctcggtcctgacctgcgag
tccgccgtcggcgtgtgcgcggcctgctacggccgctcgctcgccacgggcaagctcgtc
gacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcag
ctcacgatgcgcaccttccacaccggtggtgtggcatcggcggacgacatcacgcagggt
ctgccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgcccatcgcg
gaggccgccggtcgcatcacgatcgaggacacggatcgcagccgcaaggtgatcctgacc
ccggacaacggcgacgagccgcacgtctacccggtgctcaagcgcgcgaccctcctcgtc
gaggacggccagcacgtcgagctcgggcagcagctgcacgtcggcgccatcgacccgaag
gaggtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctcgtgggcggcgtccag
ggcgtctaccgctcgcagggcgtcccgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgcaaggtcacggtcgtcgagcacggcgacacggacctcctccccggtgag
ctggtcgaccgggcccgttacaacgaggtcaaccgcgccacgctgacggagggcaagaag
accgcctccgcccgccaggaggtcatgggcatcaccaaggcctcgctcgcgaccgagtcg
tggctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggag
ggcaagtccgacccgctgatgggcctcaaggagaacgtcatcatcggcaagctgatcccg
gccgggacggggctcgcgaagtaccgcgacgtcaccgtcaccgcgacggaggaggccaag
gccgagcgctacccgaaccgcatcttcacggatgagtcggtgttcaacgagtccgacctg
agcttcgtcgacttcgacagcttcagctcggacgactacacgcccggcacctacaactag
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