KEGG   Clavibacter capsici: AES38_12800
Entry
AES38_12800       CDS       T05227                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ccap  Clavibacter capsici
Brite
KEGG Orthology (KO) [BR:ccap00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccap03400]
    AES38_12800
Enzymes [BR:ccap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AES38_12800
    5.6.2.6  RNA 3'-5' helicase
     AES38_12800
DNA repair and recombination proteins [BR:ccap03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    AES38_12800
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_3rd_Lhr WHD_2nd_Lhr WHD_4th_Lhr DEAD Helicase_C ResIII DUF6406 AAA_25 Cas3-like_C_2 AAA_22
Other DBs
NCBI-ProteinID: ALD13677
LinkDB
Position
2727548..2732362
AA seq 1604 aa
MDPVLARFSPATREWFQGAFPGPTAAQTGAWEAVQKGSHALVVAPTGSGKTLAAFLWSID
RLASRPAPEDPMRRTRVLYISPLKALAVDVERNLRSPLVGIVQTAKRLGAEPPEVTVGVR
SGDTPAADRRSLAKTPPDILITTPESLFLMLTSAARETLAGVETVIVDEVHAVAATKRGS
HLALSLERLDALLERPAQRIGLSATVRPPEEVARFLGGRSPVSIVSPKNTKEFDLRVIVP
VDDMTELGTTAPLEGSAAQGDAPQQGSIWPHVEEGIVDLVLQHTSSIVFTNSRRLAERLT
ARLNEIYTGRIEEGRIDAQGRAIAGGSAEADAAVPVLAGAAAGAVAAGAVASRPVDATAF
SATRRTASRPPAEVMAQAGSTEGADPVLAKAHHGSVSKEQRALIEDDLKSGRLRCVVATS
SLELGIDMGDVDLVVQVEAPPSVASGLQRVGRAGHQVGEVSRGVIFPKHRADLIHSAVAA
ERMASGQIESLRVPANPLDVLAQQTVAAVALESVGVEEWFDIVRRSAPFATLPRSAYEAT
LDLLSGRYPSDEFAELRPRIVWDRDEGTIEGRPGAQRLAVTSGGTIPDRGLFGVFMVGEK
ASRVGELDEEMVYELRVGDVFALGATSWRIQEITHDRVLVTPAFGEPGKLPFWKGDGLGR
PLELGRAIGAFVRELSGSAVDDARARAGRVGLDDRAVNNLLAFLDDQKKATGHVPNDRTL
VVERFRDELGDWRVVLHSPYGMQVHAPWALAVGARVTELYGIDGATMANDDGIVVRIPET
DGEPPGADLFVFEPDELDAIVTREVGGSALFASRFRECAARALLLPRYNPGRRSPLWQQR
QRASQLLDVARKFPAFPIVLETVREVLQDVYDLPALTSLAKDIEARRIKIFETTTEDASP
FARSLLFSYVGAFMYEGDSPLAERRAAALSLDAGLLSELLGRAELRELLDPAVIARTELE
LQRLAPDRRAKGLEGVADLLRILGPLDAEEVAARLEPEESAAASEHLDALVAGKRALRVS
FGGRARVAAIEDASRLRDALGVPLPIGTPLAFVEPVADPLGDLVGRYARTHGPFTIADAA
TAIGLGSAVIADTLARLGAQRRVVEGEFRPGASGSEWCDVEVLRRLRSRSLAALRSEVEP
VERSAYARFLPAWQHVAGAERERGLRGVDGVLQVIEQLAGAPVPASAWETLVLPARVRDY
TPAFLDELTSTGEVIWSGAGTLAGADGWVSLHLADQVALTLPEPDAHDTDELQREVLTTL
GTGGGYFFRQLSDAVGSTDDKALVTALWDLVWAGLVTNDTLSPLRALLAGGSTAHKTPQR
APRGRMYRGGRMPRPDMPTRTGPSTAAGRWSIVPLAETDATVRAAGTAELLLERYGVVTR
GSVMTERVPGGFALTYKVLAGFEDTGRARRGYFIETLGAAQFSTGGTVDRLRGFTRDPDA
GERPLNALTLAATDPANAYGAALPWPRLDGSAEGDDADPAADGGGSSSSDSASSAVAAAG
SVDARGERPTGHRAGRKAGALVVLVDGELVLYVERGGKTVLQFDDDEAVLRAAAESLGGI
VRRGGVAKLAIEKVNGAFILGTPLGSALQEHGFSATPRGLRMRS
NT seq 4815 nt   +upstreamnt  +downstreamnt
atggatcccgtcctcgcgcgcttctccccggccacccgggagtggttccagggcgcgttc
cccggccccaccgcggcgcagaccggcgcgtgggaggccgtgcagaaggggtcgcacgcg
ctcgtcgtggcgcccaccggatccggcaagacgctcgcggcgttcctctggtccatcgac
cggctcgcgtcgcggcccgcgccggaggacccgatgcggcgcacgcgcgtcctctacatc
tcgccgctcaaggcgctcgcggtcgacgtggagcgcaacctgcgctcgccgctcgtgggc
atcgtgcagacggccaagcggctgggcgccgagccgcccgaggtcaccgtgggcgtgcgc
tccggcgacacccccgcggccgaccggcgctcgctcgcgaagacgccgccggacatcctc
atcaccacgcccgagtcgctgttcctcatgctcacctcggccgcgcgcgagacgctcgcg
ggcgtcgagaccgtcatcgtcgacgaggtgcacgcggtcgcggccaccaagcgcggcagc
cacctcgcgctctcgctcgagcggctcgatgcgctgctcgagaggccggcccagcggatc
gggctgtcggccaccgtgcggccgcccgaggaggtggcgcggttcctcggcgggcgctcg
ccggtgagcatcgtctcgccgaagaacaccaaggagttcgacctgcgggtcatcgtgccg
gtcgacgacatgaccgagctcggaacgacggcgccgctcgaggggtcggcggcgcagggc
gacgcgccgcagcaggggtccatctggccgcacgtggaggagggcatcgtcgacctcgtg
ctgcagcacacgtcgtccatcgtcttcacgaacagcaggcggctggccgagcggctcacg
gcccggctcaacgagatctacacgggacgcatcgaggaggggcggatcgacgcccagggg
cgggcgatcgcgggcggttccgcggaggccgacgcggccgtgcccgtgctggcgggcgcc
gcggccggcgccgtcgcggccggcgccgtcgcgtcacggcccgtcgacgccaccgcgttc
tccgccacgcgccgcaccgcgtcgcggccgcccgccgaggtcatggcgcaggcggggagc
accgagggcgcggatccggtgctcgccaaggcgcaccacggatccgtctcgaaggagcag
cgcgcgctcatcgaggacgacctcaagtccggccgcctgcgctgcgtggtcgccacctcc
agcctcgagctcggcatcgacatgggcgacgtcgacctcgtggtgcaggtcgaggcgccg
ccgtcggtcgcgagcggcctgcagcgcgtcggccgcgccgggcaccaggtgggcgaggtc
tcgcgcggcgtcatcttccccaagcaccgggccgacctcatccactcggccgtcgccgcc
gagcgcatggcgagcgggcagatcgagtcgcttcgggtgcccgccaacccgctcgacgtg
ctcgcgcagcagaccgtggcagccgtcgcgctcgagtcggtgggcgtcgaggagtggttc
gacatcgtgcggcggagcgcgcccttcgccaccctgccgcgctccgcctacgaggccacg
ctcgacctgctgagcggccgctacccgtccgacgagttcgcggagctgcggccccgcatc
gtgtgggaccgcgacgagggcaccatcgaggggcggccgggcgcgcagcggctcgcggtc
acctccggcggcaccatccccgaccgcggcctcttcggcgtgttcatggtgggcgagaag
gcgtcgcgcgtgggcgagctcgacgaggagatggtctacgaattgcgcgtgggcgacgtg
ttcgcgctgggggccacgagctggcgcatccaggagatcacgcacgaccgcgtgctcgtc
actcccgcgttcggcgagcccggcaagctgccgttctggaagggcgacgggctcggccgg
ccgctggagctcggccgcgccatcggggcgttcgtgcgcgagctgtccggatccgcggtg
gacgacgcccgggcgagggccggccgcgtgggcctcgacgaccgcgccgtgaacaacctg
ctcgccttcctcgacgaccagaagaaggccaccggccacgtgccgaacgaccgcaccctc
gtggtcgagcggttccgcgacgagctgggcgactggcgcgtggtgctccactccccgtac
gggatgcaggtgcacgcgccgtgggcgctcgcggtgggtgcccgggtcaccgagctgtac
ggcatcgacggcgcgaccatggccaacgacgacggcatcgtcgtgcgcatccccgagacc
gacggcgagccgccgggggccgacctcttcgtcttcgagccggacgagctcgatgccatc
gtcacgcgcgaggtcggcggatccgccctgttcgcgtcgcgcttccgggagtgcgccgcc
cgcgcgctcctgctgccgcgctacaacccgggccgccgctcgccgctctggcagcagcgc
cagcgcgcgtcgcagctgctcgacgtcgcgcggaagttccccgcgttccccatcgtgctg
gagaccgtgcgcgaggtgctgcaggacgtctacgacctgcccgcgctcacgtcgctcgcg
aaggacatcgaggcccggcggatcaagatcttcgagaccaccacggaggacgcgtcgccg
ttcgcgcgcagcctcctgttcagctacgtcggcgcgttcatgtacgagggcgacagcccg
ctggccgagcgccgggccgccgcgctctcgctcgacgcggggctgctgtccgagctgctg
gggcgggcggagctgcgcgagctgctggatccggcggtcatcgcgcgcaccgagctcgag
ctgcagcgcctcgcccccgaccggcgggcgaagggactggagggcgtggccgacctgctg
cggatcctcggcccgctcgacgccgaggaggtcgccgcgcggctcgagcccgaggagtcc
gccgccgcgtccgagcacctcgacgcgctcgtcgccggcaagcgcgcgctccgcgtctcc
ttcggaggccgcgcgcgcgtcgccgccatcgaggacgcgagccgcctccgcgacgccctc
ggggtgccgctgcccatcggcacgccgctcgcgttcgtcgagcccgtggccgatccgctc
ggcgacctcgtcggccggtacgcgcgcacgcacggccccttcaccatcgcggacgcggcc
accgccatcggcctcggatccgccgtcatcgccgacacgctcgcccggctcggcgcccag
cggcgcgtggtcgagggcgagttccggccgggcgcctcgggcagcgagtggtgcgacgtc
gaggtgctgcggcgcctgcgcagccgctcgctggcggcgctccgcagcgaggtggagccg
gtcgagcgatccgcgtacgcgcgcttcctccccgcgtggcagcacgtcgcgggcgcggag
cgcgagcgcgggctccgcggggtcgacggcgtgctccaggtcatcgagcagctcgcgggc
gcgcccgtgcccgcctccgcgtgggagacgctcgtgctgccggcgcgcgtgcgcgactac
acgccggccttcctcgacgagctcacgtccacgggcgaggtcatctggtcgggcgccggc
acgctcgcgggcgccgacggctgggtcagcctgcacctcgccgaccaggtcgcgctcacc
ctgcccgagcccgacgcgcacgacaccgacgagctgcagcgcgaggtcctcacgacgctc
ggcacgggcggcggctacttcttccggcagctgagcgacgccgtcgggtccacggacgac
aaggcgctcgtcaccgcgctgtgggacctcgtgtgggcgggcctcgtcacgaacgacacg
ctgtcgccgctgcgggcgctgctcgcgggcggatccacggcgcacaagacgccgcagcgg
gcgccgcgcgggcgcatgtaccggggcgggcgcatgccgcggcccgacatgcccacgcgc
accggcccgtcgacggccgccgggcggtggtccatcgtgccgctcgccgagaccgacgcc
accgtgcgagccgcgggcacggccgagctgctgctcgagcggtacggagtcgtcacgcgc
ggatccgtcatgaccgagcgcgtgcccggcggcttcgcgctcacctacaaggtgctcgcg
ggcttcgaggacacgggacgcgcgcgccgcgggtacttcatcgagacgctgggcgcggcg
cagttctcgaccggcggcacggtggaccggctgcgcggcttcacgcgcgaccccgacgcg
ggcgagcggccgctgaacgcgctgacgctcgcggccacggatccggccaacgcgtacggg
gcggcgctgccgtggccgcggctcgacgggtcggcggagggcgacgacgcggatccggcg
gcggacggcggcggcagcagcagcagcgacagcgcgtcctcggccgtcgcggcggccggc
agcgtcgacgcgcgcggcgagcggcccaccgggcaccgtgccggtcggaaggcgggcgcg
ctcgtcgtcctggtcgacggcgagctcgtgctctacgtggagcgcggcggcaagaccgtg
ctgcagttcgacgacgacgaggccgtgctgcgggcggcggccgagtcgctcggcggcatc
gtgcggcgcggcggcgtcgcgaagctcgcgatcgagaaggtcaacggcgcgttcatcctc
ggcacgccgctgggatccgcgctgcaggagcacgggttctcggcgacgccgcgcgggctg
cggatgcgctcgtga

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