Campylobacter californiensis: CCAL_0560
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Entry
CCAL_0560 CDS
T10527
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccaq Campylobacter californiensis
Pathway
ccaq03030
DNA replication
ccaq03430
Mismatch repair
ccaq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCAL_0560 (dnaE)
03430 Mismatch repair
CCAL_0560 (dnaE)
03440 Homologous recombination
CCAL_0560 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaq03032
]
CCAL_0560 (dnaE)
03400 DNA repair and recombination proteins [BR:
ccaq03400
]
CCAL_0560 (dnaE)
Enzymes [BR:
ccaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CCAL_0560 (dnaE)
DNA replication proteins [BR:
ccaq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CCAL_0560 (dnaE)
DNA repair and recombination proteins [BR:
ccaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CCAL_0560 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
pAdhesive_11
Motif
Other DBs
NCBI-ProteinID:
QCD50479
LinkDB
All DBs
Position
540079..543684
Genome browser
AA seq
1201 aa
AA seq
DB search
MSDFTHLHLHTEYSLLDGANKIKELAKTLKEQGVKSAAITDHGNMFGAIDFYQTMKKEGI
KPLIGIEAYIHNQDELNDKSTKQRFHLILIAKNQTGYKNLMYLSSMSYVEGFYYYPRINK
KILKEHSEGVICTAACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFGDDFYLE
IMRHGIGDQRRIDDDILKISRETGIKVIATNDTHYTFKERADAHEVFMCIAMNKNLDDPN
RLRHSVHEFFVKTPKQMNELFLDIPEAIENTQEIVNKCNLELDLGNPTPPNFKFTIEYAN
ERGLELPEPQNRYSFVNDAVFFEYECKKGLEERLKFVPQEQHEMYRSRLKTEIDIINKMN
FPGYMMIVWDFINEAKKRGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLLFERFLNPER
VSMPDIDVDFCQTRRGEIIDYVTDKYGKFNVAGVITFGKLLAKGVIRDVARVCGMPYAEA
DTMAKLIPDELGITLKDAFEKEPKISELISRDGNAARVWKFALDLEGLNRNAGQHAAGVV
ISNEELWNKTPLFRQPNSPEDHYVTQYSLKYLEDVDLIKFDFLGLKTLTVIDNAIKLVKA
RTGKDIVWENIDKNDKKVYDMIQGGDAIGIFQIESEGMRKLGTSLKPDCFEDIVAMLALY
RPGPMESGMLDDFVKRKHGEAAITYAFPELEPILSPTYGVIVYQEQVMQIVQKIGGFSLG
GADLVRRAMGKKDPELLKKQKDLFVEGAIKMGFDADKSGDLFDLILKFAGYGFNKSHSAA
YAYVTFQTAYLKAYYPAEFMAALLTSEENNTDKIVRYIDESKRLKIDVVGPDINHSMKEF
SVVETDGKDQIIFGFGAIKGVGGAAIESMIGERENGVFKDLDDFVSRVDSFKVNKKVIES
LVKSGAMDSFHLTRFCLINNIENILEACKNAATLRKNATESLFGEDESMNEVKVKLLPTD
VEYNKKDMLQFEQESVGIYLSGHPLDEYKVQIESIKYTLSSQFDTLPQNSEIMVVGKIED
FSTRITKSGKKMGTINILDFHGSIEIAVFERELVRVEEILASSEEKNLPFAFKINISKDD
QFIRAKLNSIHTLSEAGELKFETRKLKQFGNYAKKDEKQAPQKVKEYELLEVILDLNELS
KDKITKLYTLGFDEHQAGVDKNNKRLVLKIKNSQTDEIFVYNTEFIVGDNFGQKALNLMA
G
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttacacatttgcatctacatacggaatactcattgttagatggggcaaac
aagataaaagagcttgctaagacactaaaagagcagggcgtaaaaagcgctgcaattact
gatcacggcaacatgtttggcgctatcgacttttatcaaaccatgaaaaaagagggcata
aagccacttatcggcatcgaagcttatatccacaatcaagacgagctaaatgataaaagc
actaagcagcgttttcaccttatcttgatcgcaaaaaaccaaaccggatataaaaattta
atgtatctaagctcgatgagctatgtcgagggattttactactatccgcgcataaataaa
aaaatacttaaagagcatagcgagggtgtgatatgtactgctgcgtgcttgcaaggcgag
gttagctggcatttaaatttaagcgagagaaacctaaaatacggtgcgaaaggttacgaa
aaagcaaaagaagtagcgcttgaatataaagaaatttttggagatgatttttatcttgag
atcatgcgtcacggtataggcgatcagcgcaggatcgatgatgatatactaaaaatttca
agagagaccggcataaaggttatcgcgacaaacgatacgcactatactttcaaggaaaga
gcagatgctcatgaagtatttatgtgtatcgcgatgaacaaaaacttagacgatccaaat
cgcttgcgtcacagtgttcatgagttttttgtgaaaactccaaagcagatgaatgagctt
tttttagatatcccagaagcgatagaaaatacgcaggaaatagtaaataaatgtaactta
gagcttgatcttggcaatccaactcctccgaattttaaatttactatcgaatacgctaac
gagcgtggactagagcttcctgagccgcaaaacagatatagctttgtaaatgatgcggta
ttttttgaatacgaatgtaaaaaagggcttgaagagaggctaaaattcgttcctcaagaa
caacatgagatgtatagaagtcgcttgaagacagagatagatatcataaataaaatgaat
ttcccgggctatatgatgatagtctgggactttatcaatgaggcgaaaaagcgcggtatt
ccggtgggtccgggacgtggatctgctgcgggaagtttggttgcgtattcgcttaagata
actgaccttgacccgataccttatagcttgctttttgagagatttctaaatccagaacgt
gtaagcatgcccgatatagacgtggacttttgtcaaacaagacgcggtgagattattgat
tatgttactgataaatacggtaaatttaacgtcgcaggagttataacctttggtaagcta
cttgcaaagggtgttatacgtgacgttgccagggtttgtggtatgccttatgccgaagcc
gatactatggcaaagctcataccggacgagctgggcataacattaaaagacgcctttgaa
aaagaaccaaaaatttctgagctcatatcaagagacggtaatgcggctcgtgtttggaaa
tttgcgcttgacttagaggggctaaaccgaaacgcaggtcagcatgctgcaggtgtggtt
atctcaaacgaagagctttggaacaagacgccattgtttcgccaaccaaacagtcctgaa
gatcactatgtgacgcagtatagtctaaaatatttagaagatgtcgacctgataaaattc
gactttcttggacttaaaactttaaccgttatagataacgctataaagctggttaaggca
agaaccggcaaagacatagtttgggaaaatatcgacaagaacgataaaaaagtttacgac
atgatacaaggcggcgatgcgatagggatattccagatagaaagcgagggtatgagaaag
ctaggaactagcctaaaacccgactgctttgaagacatcgtcgcgatgcttgctctttat
cgtccgggacctatggagagtggcatgcttgatgacttcgttaagcgtaagcacggagag
gcggcgataacttatgcttttcctgagcttgagcctatcttaagccctacatacggagtt
atagtctatcaagaacaggttatgcaaatagttcagaaaataggtggttttagccttggt
ggtgccgaccttgttcgtcgtgccatgggtaaaaaagacccagagctgctaaagaagcaa
aaggatttatttgttgaaggcgctataaagatgggctttgatgcggataagtcgggtgac
ttgtttgaccttatcttaaaatttgcgggatacggctttaataaatcacactcagcggct
tatgcctatgtcacgtttcaaactgcgtatctaaaggcttactatccagctgaatttatg
gcggcactcttaacaagcgaggaaaataacaccgataaaatcgtgcgctatatcgatgag
agtaaaaggctaaagattgatgtggtaggacctgatataaaccactctatgaaagaattt
agtgttgttgagactgatggtaaagatcagatcatatttggatttggcgcgataaaaggt
gtcggaggagccgcgatagaaagcatgataggtgagagagaaaacggcgtctttaaagat
cttgatgattttgtttctcgcgtagattcgtttaaagttaataaaaaggttattgaaagc
cttgtaaaatcaggtgcaatggatagttttcacttgactagattttgcttgataaataat
atagaaaatatcctagaagcatgtaaaaatgccgccacacttcgcaaaaatgccacagag
agcctttttggcgaggatgaaagcatgaatgaagttaaggtcaaacttttaccaactgat
gtcgagtataacaaaaaagatatgcttcagtttgagcaagaaagtgtcggaatttatctt
tctggacacccgcttgatgagtataaagtgcagatcgaaagtatcaaatacactctaagc
tcgcagtttgataccttgccgcaaaattcagagataatggtagtaggtaagatagaggac
tttagtaccaggataaccaaaagcggtaaaaaaatgggcactataaacatacttgacttt
catggaagtatcgagatagcggtctttgaaagagagcttgttagagtggaagaaattcta
gcaagcagtgaggagaaaaatttaccttttgcatttaagataaacataagcaaagatgat
caatttataagagcaaaattaaactccatccacactcttagtgaggcaggtgagcttaaa
tttgaaactagaaaactaaaacagtttggcaactatgctaaaaaagatgagaaacaagct
ccgcaaaaagtaaaagaatacgagcttttagaggttattttggatttaaatgaactaagt
aaagacaagataacaaaactttacacgcttggttttgacgaacatcaagcaggagttgat
aaaaacaacaaacgccttgtgttaaagattaaaaacagccaaacggatgaaatttttgtc
tacaacacggaatttatcgttggagataacttcggacaaaaagccttaaatttaatggct
ggataa
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integrated database retrieval system
