Cyprinus carpio (common carp): 109044902
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Entry
109044902 CDS
T05134
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109044902 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109044902 (xab2)
03041 Spliceosome [BR:
ccar03041
]
109044902 (xab2)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109044902 (xab2)
Spliceosome [BR:
ccar03041
]
Complex B
Other components
Prp19-related factors
109044902 (xab2)
Complex C
109044902 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_2
TPR_8
TPR_12
Suf
ARM_TT21_C
TPR_1
TPR_15
Tcf25
DUF4515
Motif
Other DBs
NCBI-GeneID:
109044902
NCBI-ProteinID:
XP_042575690
Ensembl:
ENSCCRG00000016737
UniProt:
A0A9Q9W2L8
LinkDB
All DBs
Position
B3:complement(12625137..12633191)
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AA seq
872 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRVWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENLVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKVKSKTLYTLTLLMHKLTPFSCFFQARDVYEE
AILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELGQDEEGDIDLELRLARFELLITRR
PLLLNSVLLRQNPHNVHEWHKRVKLYEGQPRQIINTYTEAVQTIDPMKATGRPHTLWVSF
ARFYEDNEQLDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYDQALRILRKATA
IPSRKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQII
INYAMFLEEHNYFEDSFKAYERGIALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFE
QALDRCPPKYSKTIYLLYAKLEEEYGLARHAMAVYERATAGVEPEERHQMFNIYIKRAAE
IYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTA
HFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTNASGTVSDLAP
GQSGVDDMKLLEQKAQQLAAEAEQDKPKPKEKILFVRSDTSRSELAELAKQANPDEIDID
DEDEDAEDGEPDEVQLEQKSVPTAVFGGLKDD
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgctcagcggaaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaaa
tgtgtcacggatccggcatacgaggaggtgaacaactgtcatgagagagcgcttgtgttt
atgcataagatgccgagggtatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagccgacggacattcgacagggcgttaagagcgctacccattacccagcat
cctcgcatctggcccctgtatcttcgctttgcccgtaacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggacgaagctgcgattcggctggcagctgtggtcaat
gatgaaaaccttgtttcgaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccagacaaggtgacttcactgaacgtgggagcgattatcaga
ggaggtctcactcgctttactgatcagctgggcaaactctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggtaaaatctaagactctgtatacactaaccctg
ctcatgcacaaattgacaccattctcttgtttttttcaagctcgagatgtatacgaggag
gccatcctaaccgtagtcactgtgagagacttcacccaggttttcgacagctatgcgcag
tttgaggagagcatgattgctgccaagatggaaaccacgtctgaactgggacaagatgaa
gaaggtgacattgacttggagttgcgattggcccgttttgagttgctgataacaagacga
ccgcttttactaaacagcgtgctgctgcgtcagaaccctcacaacgttcacgagtggcac
aagagagtcaagctctacgagggccaaccacgacagatcatcaacacatacactgaagct
gtgcaaacgatagatcctatgaaggccacaggaagacctcacactctctgggtgtccttt
gccagattctatgaggataatgaacagctggatgatgctcggactatctttgagaaggcc
acaaaggtgaactacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagag
atggagctgagacatgagaattatgaccaagctttgcgtatactaaggaaagcgacggcg
attccatcaagaaaagccgagtattttgattcttcagaaccagtgcagaatcgagtttat
aagtccctgaaagtgtggtccatgcttgcagacttagaagagagtcttggcacattccag
tccacaaaggcagtgtatgatcgcatcattgatctccggatcgccacacctcagatcatc
attaactatgccatgtttcttgaagaacacaactactttgaggatagtttcaaggcatac
gagcgtggcattgccctttttaaatggcctaacgtccatgacatctggaacacgtacctc
accaagttcatcgaccgttatggaggcaaaaagctggagagagcgcgagatctgtttgag
caagcactggataggtgtcctcctaaatattccaaaactatctacttgctgtatgctaag
ctggaagaggagtacggtctggcgcgacatgccatggctgtgtatgagagagccactgca
ggtgtagaaccagaggaacgacatcaaatgttcaacatctacatcaagcgggcagcggag
atttatggagtcactcacacaagagccatctatcagaaagccattgaggtcctgccagat
gagcacgccagagacatgtgtctgcgcttcgctgacatggagagcaaacttggggagatt
gacagagcgagagccatctactcgtactgctctcagatctgtgatccgaggttgaccgct
catttctggcaaacctggaaggagtttgagatacgccacggtaacgaggacacaatccgt
gagatgctgcggattaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatg
tcctctcagatgctcaaggcaaccaccaatgctagtggaacagtgtcagatcttgctcct
gggcagagcggagtggatgacatgaagctgctggagcagaaggctcaacagctcgctgca
gaggcagaacaggacaaacccaaacctaaagagaagatccttttcgtcaggagtgacacc
tctcgcagtgaactcgctgaactggctaaacaagctaatccagatgagattgacattgat
gatgaagatgaggatgcagaggatggggaaccagatgaggtgcaactggagcagaagtct
gtccctactgctgtctttggaggactaaaggatgactga
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