Cyprinus carpio (common carp): 109045984
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Entry
109045984 CDS
T05134
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03008
Ribosome biogenesis in eukaryotes
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
ccar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109045984 (nxf1b)
03015 mRNA surveillance pathway
109045984 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
109045984 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109045984 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109045984 (nxf1b)
03009 Ribosome biogenesis [BR:
ccar03009
]
109045984 (nxf1b)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109045984 (nxf1b)
mRNA cycle factors
Stress granule specific factors
109045984 (nxf1b)
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
109045984 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
NTF2
LRR_8
LRR_4
LRR_9
TAP_C
Motif
Other DBs
NCBI-GeneID:
109045984
NCBI-ProteinID:
XP_042566867
Ensembl:
ENSCCRG00000005277
ENSCCRG00000009549
UniProt:
A0A9Q9VKU2
LinkDB
All DBs
Position
A21:complement(13537131..13552755)
Genome browser
AA seq
605 aa
AA seq
DB search
MATADDSRYYSEHDDRVGGPKRRNRKGRGPFRAPLYSDQISRPRHRGGHGGGGGGPGPRS
RLQDDDGDVTMSEGPQDSGSQRRFNPYGRPLNRREERNRKGGRGGGGGGGNDDRGGNRYG
VRGGGAGGGSDGSRKNWFKMTIPYGKKYDKDWLLSSLQSCSVPFHAVHYHTDGNKAQFYI
EDSAIANALFKASRKITDKDGYKVTVIMNSCPPPALIHTDLKAADLEHLKQCMAKRFDGS
QQALDLNNIRVDPDLVSQNIEVTLNRRNSMLAVIKIIEENIPELICLNLSNNRLYRLDDL
ADIVNKVPNLKILNLSHNELKTERELDKLKGLKLVELSLEGNPLCGHYKIQADYVSAIRE
RFPKLLRLDGHVLPPPIGFDLEVAPATLPPCKASYFCSEEIKNIILCFLQQYYSIYDSGD
RQPLLEAYHDGAAFSLSIPFTLQNASKSSLGEYQKDCRNIRRMKDDPTTRFRLIKHTRLN
VVAFLNELPKTQHDIASLIVDVNTYTATLLAFTVSGVFKENGKSRDSFRAFSRVFIAVPA
GNAGLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLAAFSLMSGMNL
EWSQK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggacgactcgcgctactatagtgagcatgatgaccgtgttggtggacca
aagcgccggaatcgtaaaggcagaggccctttcagagcccccctgtacagcgatcagatt
tcacgaccgaggcatcgaggtggtcacgggggtggtggaggaggccctggtcctcggtcc
agacttcaggatgatgatggagatgtgaccatgtcagaaggtcctcaagacagtggctcc
cagcgcagattcaatccgtatggccggccattgaatcggcgcgaggaacgcaatcgcaaa
ggtggacgtggtggtggtggtggaggtggaaatgacgatagaggtggcaatcgatatgga
gtcagaggtggtggagctggcggtggttctgatggaagccgcaagaactggtttaaaatg
actattccttacgggaagaaatatgacaaagattggcttttgtcttcgcttcagagctgt
tccgtgccatttcatgccgttcattatcacactgatggcaacaaggcccagttttatatt
gaagactccgcaattgctaatgctttgtttaaagcgtcacgaaaaataacagacaaagat
ggatataaggtgactgttattatgaacagctgcccaccacctgctttgattcacactgat
ctgaaggctgcagatttggagcatttgaaacaatgcatggctaaacgctttgatgggtcg
cagcaggctcttgatctgaacaacatcagagtcgatccagatttggtttctcaaaatatt
gaggtcactttgaatcggaggaactccatgttggcagttatcaaaataatcgaggagaac
attcctgagctgatttgtctaaacctgagcaacaaccggttgtacaggctcgatgacttg
gcagatattgtcaacaaagttcccaacttgaagattcttaatctgtcacataatgagctg
aagacagagagagaacttgataaactgaagggtctgaagctggtggaactctcgttggag
ggaaatcctttatgtggacactacaagatccaggccgactatgtcagtgccattcgggaa
cgattccccaagctcctcagactggatggacacgtccttccgcctcccattggttttgat
ttggaagttgctcctgcgactcttcccccctgcaaggctagctacttctgctctgaagaa
atcaagaacatcatcctttgcttcctgcaacagtattacagcatatatgactcaggagac
agacagcccttgctggaagcttaccatgatggggcagctttctccctcagcattcccttc
accctgcagaacgcttcaaaaagtagtttaggggagtatcagaaagactgtcgcaatatc
aggcgtatgaaagatgaccccactacacggtttcgtttgattaaacacacaaggttaaat
gtggtggctttcctgaacgaacttcccaaaactcaacatgacatcgcctccttgatcgta
gacgttaacacgtacacagctacattgttggcatttacagtcagtggagttttcaaagag
aatggcaaatcgcgagactcattcagagccttctcccgggtgttcattgctgttcctgct
ggaaatgctggtttgtgcattgtgaatgatgagctcttcgttcgaaatgccactacggag
gaaattcgacgtgcgtttgttgcaccagcccccacaccgtccagcagccctgtgcccact
ctgtccgccccgcaacaagaaatgcttgctgccttctccctaatgtctggcatgaacctt
gaatggtctcagaagtaa
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