Cyprinus carpio (common carp): 109046215
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Entry
109046215 CDS
T05134
Symbol
taf1c
Name
(RefSeq) LOW QUALITY PROTEIN: TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109046215 (taf1c)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
109046215 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
109046215
NCBI-ProteinID:
XP_042603650
UniProt:
A0A9Q9XL62
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All DBs
Position
B21:complement(4340920..4361416)
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AA seq
1008 aa
AA seq
DB search
MDSKFPDQLFPHFYLDGPPEVKSKHSYGGWGSYERVFAVSAGPCDGDQSSVQHVFESQHT
LSGEEWVPLKPAVTPLIPPCEDAKLSSDVLPDPMDFPEHMQYFYKHHYMDAFSTMGHLLQ
DNLSFKKKQPKDVLSMSWANNFIKGLNYKRCEVAFYSRKVRHLHNLVGDVVSDVPPSLLA
SLLHEELTSQREQQRFCADATGGALGYVPLHESQGFSDGCLIYPSGDAMDKLNFHRVVQQ
FSDDKPPSFLMDSKPFVYYLNGPVRQISSANMEDIGNVAVRSDYFCGVWLLGDKRKPLLI
DVIQTKDRFSGITVSPHFPNELAVVNERGAAYLWTAKKGLQKFREEDSNLYFNAKSPWRW
CEFSCHPRVMVYAERTGAELTDIRSADSNHTLFRIGRTAACMSGERVILTKYLSKSHAHH
HLINTQFSTYIMDERVPSIPMLKWDHMMESPPMFACDLPAQTPRQTCKLLLGAQRSQELM
LLQYTGGREHVCQTRGSIQKLSSPKESLSHLNLLLPHKRHLAQKRLNVPAAGFTAVQKKD
YLSVFQLTETGDIFYQMLKLHTDQTASSNDAPEQSVSVQPTVETGESENMQSCTDNDDQS
VQSDSETEGRQAALRHLEVIDNVDNDGLNTLDTNENIRKEPSSNHQLGITQLVPPDRPTQ
ARIQISKLPGTNGLSPFSKRLMPKSVTINFGGSERMIKCMMGKKLNKPKEDKWMRLRKDL
QEVMRKKEMLLHGVTYLPHLNVTPVPDPVDPDDWPDDVSQRLAASWEGQWTYWWEEKLGL
NRDEKIAALRRKRRRQKQAKARKRTSLSGSFTSSVSYQESLSGLSSVESQCLGSDEETLE
SSNSQAPDMEEWRARPEIHRKSPVILRRFLNEQSTADKSFRSPKKSPPRPDQNLLTSPSK
SQSSIQVERPTSRTPSVAAGMDLGPPASLPSTQPTSVQSKRRKEFYLSSLPTSQMSTQDS
ALDGGYPSPRIHLSSPTPSHPSLSSQRVSQFRSLSQASQPKKKSRMGF
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaaatttcctgaccagcttttcccacacttctatctggacggaccgcctgaa
gtgaagtcgaagcatagttacggaggctggggttcatacgagcgcgtgtttgctgtcagt
gcgggcccgtgtgatggtgatcagtcatcggtccagcatgtgtttgaatcccagcacact
ctgagtggtgaggaatgggtgccgctcaaaccagccgttacccctttaattccaccatgt
gaagatgccaaactctcatctgatgttcttccagatccaatggattttccggagcacatg
cagtatttttacaagcatcactatatggatgcgttctccacaatgggacatttgcttcag
gacaacttatctttcaaaaagaaacagccaaaggatgttttgtcaatgagctgggccaac
aacttcataaagggcttaaattataaaaggtgtgaggtcgcgttttactcgcggaaggtc
cgtcatttgcacaatcttgtcggtgacgttgtgagcgatgttcctccttctctcctggcc
tcgctcctccatgaggagctgacgtctcagcgggaacagcagcggttctgtgcagacgcc
acagggggcgctctgggatacgtgcccttacacgagtcccaggggttcagtgatggctgt
ctgatctatcccagcggagacgcaatggacaaactcaatttccacagggtggtgcaacag
ttcagtgatgacaagcctcctagtttcctcatggactccaaaccttttgtctattatttg
aatggacctgtcagacagatcagttcggccaatatggaggatataggtaacgtggctgtg
cgctcggattatttctgtggcgtttggttgctaggagacaaaagaaagccactgttaata
gacgtcatccagacaaaagatcgcttctccggcatcactgtcagtccacacttccccaat
gagctcgcggtggtcaatgagcggggagcagcttatctttggactgcgaaaaaaggattg
cagaagttccgtgaagaagattccaacctgtacttcaatgctaagtcgccatggcgatgg
tgtgagttctcctgtcacccgagagtgatggtgtatgctgaaagaacaggggcggagctt
acagacattcggagtgctgatagtaatcacacgttgtttcggatcggaaggacagcagct
tgtatgtcgggagagcgagtgatcctcaccaaatacctgagtaaaagccacgcccatcac
cacctcattaatacccagttttccacctacatcatggatgaacgggttcccagcatcccc
atgctgaaatgggaccatatgatggagtctccaccgatgtttgcctgcgatttgccagca
cagaccccgaggcaaacgtgcaaactgctgctgggtgctcagaggtcacaggaactcatg
ttactgcagtacacgggtgggagagagcacgtctgtcagactcggggatccattcaaaag
ctttcaagtcccaaagagagtctgagccacctaaaccttctgctaccccacaagagacac
ctcgctcagaagagactgaacgtgcctgctgcaggtttcacagctgtacagaagaaggac
tacctgtctgttttccagctcacagaaaccggagacatcttttaccaaatgctgaagttg
cacacagatcagacagcaagcagtaatgacgcaccagaacaatctgtcagtgtgcaacct
acagtagaaactggagagagcgagaacatgcagtcctgcactgacaatgacgaccaatct
gttcagagcgactctgagactgagggacggcaggcggcgcttcgtcatttggaagtaatt
gacaatgttgataatgacggcttaaatactttggatacaaatgaaaatatcaggaaagaa
ccatcaagcaatcatcaattgggaataacccaactggttccaccagaccgcccaacccaa
gcaaggatccagatctccaagctgcctggaacaaatggtttaagcccattttcaaaaagg
ctgatgccaaaaagcgtcaccataaatttcggcggatcagaacggatgattaagtgcatg
atgggcaaaaagcttaataaaccaaaggaagataaatggatgagactgaggaaagacctt
caagaggtcatgaggaagaaagagatgctcttgcatggggtcacttacctccctcacctg
aacgttacgccggttcccgatcctgtagatcccgatgactggcctgacgatgtgagccag
cggttggctgcgtcgtgggagggccagtggacatactggtgggaggagaagctgggtttg
aaccgggacgagaaaatcgcagctctccgtcgaaagcgtcggagacagaagcaggccaaa
gctcgcaaacgcacctcactttctggaagcttcacctcgtctgtgagttaccaagagagt
ctctctggtttgtcatcggtggagagtcagtgtctgggttcggatgaagagactttggag
agctcgaactcgcaagctccggacatggaggaatggagagccagacctgagattcacaga
aagagccccgtcatactgagacggtttttaaatgaacaatcgactgcagacaaatctttc
agatctcctaaaaaatctcctccaaggccggatcaaaaccttttgacatctccgtcaaaa
tctcaatcttccattcaggttgaacgaccgacctctagaacccctagtgttgcagcaggg
atggatttgggtcctcctgcgtcgcttccctccacacagccaacatctgtccaatcgaaa
aggcgcaaggagttttaccttagttcccttcccacgtcccaaatgtcgactcaggactcc
gcactggatggtggatatccttcacctcggattcacctttcttctccgactccatctcat
ccttccttgtcttctcagagagtttcccaattcagaagcctctctcaggcctcccagcca
aagaagaagtctcggatgggcttctga
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