Cyprinus carpio (common carp): 109046511
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Entry
109046511 CDS
T05134
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109046511
09123 Folding, sorting and degradation
03018 RNA degradation
109046511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109046511
03041 Spliceosome [BR:
ccar03041
]
109046511
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109046511
mRNA degradation factors
5'-3' decay
Lsm complex
109046511
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109046511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
InhA-like_MAM
Motif
Other DBs
NCBI-GeneID:
109046511
NCBI-ProteinID:
XP_018919801
Ensembl:
ENSCCRG00000043095
UniProt:
A0A8C1QZN5
A0A9Q9UXF8
LinkDB
All DBs
Position
A22:5522392..5523561
Genome browser
AA seq
98 aa
AA seq
DB search
MFKKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTTEYMRDPDDQYKLT
EDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagaaggagagtatttttgatttgtcgaaatacatcgacaaacatataagagta
aagttccaaggaggtcgtgaagcaagtggagttttaaaaggcttcgacccgctgttgaat
cttgtgttggatggcaccactgaatacatgcgagatcctgacgatcagtataagctgacc
gaagacaccaggcagctcggtctggttgtgtgtcgagggacgtcagtcgtgctgatctgt
ccacaggacgggatggaagccattcccaaccctttcattcaacagcaggatggataa
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