Cyprinus carpio (common carp): 109046857
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Entry
109046857 CDS
T05134
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03020
RNA polymerase
ccar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109046857
09124 Replication and repair
03420 Nucleotide excision repair
109046857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109046857
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109046857
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109046857
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109046857
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109046857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
109046857
NCBI-ProteinID:
XP_042594731
UniProt:
A0A9Q9X558
LinkDB
All DBs
Position
B14:11872683..11885513
Genome browser
AA seq
1181 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVRLVSTESSKQKISFSDRDIKNVGGCTRTCLGLGHWTLQMFTEHS
KRTSLAPEGPNLVSPKRALKIKYAKESMLVRMPSFVPELCVVCKASVKNLLRGMFKNLLK
EIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRL
TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS
VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQ
MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSW
QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELP
AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPT
RETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCS
TFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQED
MPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSN
LLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQ
PMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTH
TYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggattgttattagctcatactttgatgaaaaaggtttggtg
cgacagcagctggactcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaagaa
ccgcctcggtacctcctgaagtttgagcaaatctatctgtccaaacccactcactgggaa
agagacggcgctccatcacctatgatgccaaacgaagctagactccgaaatctcacgtat
tctgcccctctgtatgtggatatcacaaagaccatcataaaagatggggaagagcaacag
cagacacagcatcagaaaaccttcatcggcaaaattcccatcatgctccgttccacgtac
tgtctcctcagtggcctaacagatcgtgatctttgtgagttgaatgagtgcccactggac
cctggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgccaagaaagactccaagtatgcttacacaggagag
tgcaggtcatgtctggagaactcctccagacccaccagcactatctgggttagcatgatg
gcccgtggaggacagggagtgaagaaaagtgccatcggccagaggattgtttccactttg
ccgtatatccggcaggaagtacccatcatcatagtattccgtgcattgggatttgtgtct
gatagagacatcctggaacacatcatctatgactttgatgatcctgagatgatggaaatg
gtgaagccatctttggatgaggcctttgtgattcaggaacagaatgttcggttggtctcg
accgagtccagcaaacaaaaaatatctttctcggaccgagacatcaaaaacgttggtggt
tgcactcgtacttgtctcggacttggtcattggactctccaaatgttcaccgagcacagc
aaaagaacttcattggctccagaggggccaaacctggtgtcaccaaagagagcactaaaa
atcaaatatgctaaggagagtatgcttgtgcgcatgccatcatttgtccccgagctttgc
gttgtgtgcaaggcatcagtcaagaatcttctcagaggaatgttcaagaatcttctgaag
gagattaggatctacgcacagaagtttattgacagggggaaagactttaatctggagctg
gccattaagactcgcatcatttctgacggactcaagtactctctagccacgggaaactgg
ggggatgtaaagaaagctcatcaggcaagagctggagtatcacaggtgctgaacaggttg
accttcgcttccactctttcccacctgcgccgtgtaaactcgcctataggacgagatggc
aagctggccaaacctaggcagcttcataacacactgtggggtatggtgtgccctgctgag
accccagagggccatgctgtaggtttggtgaagaatttggcgctcatggcctacatttct
gtgggatctcagccgtcccccatcctggagttcttggaagagtggagcatggagaacctg
gaggaaatctcacctgctgccattgcagatgctacgaagatttttgtgaatggttgctgg
gtgggtattcataaagatccagagcaactgatgaacacactgcggaaactgaggagacag
atggacatcattgtgtctgaggtgtcaatgatcagagatattcgtgagcgggagatcagg
atctacacagatgctggcaggatctgccgtccgctgcttattgtagaaaagcaaaaactt
cttctgaagaggcgacatattgaccagctcaaagagagagagtacaacaactacagttgg
caggacctggtagccagtggcgtggttgaatatattgacacactagaggaggagactgtg
atgttggccatgaccccagatgaccttcaagagaagggagtggcttattgctccacctac
acacattgtgagatccacccgtccatgattttgggcgtctgtgcatccatcattcctttc
cctgatcacaaccagtctcccagaaacacataccagtctgctatgggtaaacaagccatg
ggagtttacatcaccaacttccatgtgcgtatggataccctggcacatgtgctctactac
ccccagaaacccctagtcacgactcgttccatggagtacctgcgctttagagagctgccg
gcaggtatcaattccattgtggctattgcatcatatactggatacaaccaggaagattct
gtcatcatgaaccgttcggctgtggatcgtggattcttcaggtctgtgttctaccgctca
tacaaggaacaggaatctaagaaaggctttgaccaggaagagatctttgagaagcccacc
agagagacctgtcaaggcatgcgacatgccatctatgacaagttggatgacgatggtttg
attgctcctggtgtacgtgtgtctggcgaagatgttatcattggtaaaaccgtaaccctt
cccgagaatgacgatgagctggatagcaccaaccgtcgctacaccaagagagattgcagc
actttcctgcgcaccagtgaaactggaatcgttgaccaagtcatggtcacgctaaaccaa
gagggctacaagttttgcaaaattagggtccgttcagttcgtataccacaaattggagac
aagtttgccagtcgtcacggtcagaagggtacctgtggtatccagtacagacaagaggac
atgccgttcacatgtgaaggaatcactccagatatcatcatcaaccctcacgccatcccc
tccagaatgacagtcggccatttgatcgagtgcctgcaggggaaggtgtccgctaacaaa
ggggagattggtgatgccacgccattcaatgatgctgtgaacgtacaaaaagtctccaac
ctgctgtcagaatatggttaccatctgagaggcaatgaggttctgtataatggcttcacc
ggccgtaagctcacctctcagatcttcatcggacccacatactaccagcgtctgaagcac
atggtggatgataagatccactccagagcccgtggtccggtccagatcctcaacagacag
cccatggagggtagatcacgtgatggtgggctgcgttttggagagatggaacgtgactgt
cagatcgctcacggtgctgctcagttcctaaaagagaggctttttgaggcctctgaccca
taccaggtccacgtctgcaatttatgtggcctcatggccatcgcaaacacccgcacacac
acctatgagtgcaggggctgccgcaacaagacacagatctctttggtgaggatgccgtat
gcctgtaagctcttattccaggagctgatgtctatgagcattgccccacggatgatgacc
agctaa
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integrated database retrieval system
