Cyprinus carpio (common carp): 109047507
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Entry
109047507 CDS
T05134
Symbol
rc3h1a
Name
(RefSeq) roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109047507 (rc3h1a)
04121 Ubiquitin system [BR:
ccar04121
]
109047507 (rc3h1a)
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109047507 (rc3h1a)
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109047507 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
Prok-RING_4
zf-CCCH
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
Baculo_IE-1
FYVE
Ribosomal_S4
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
109047507
NCBI-ProteinID:
XP_042605881
Ensembl:
ENSCCRG00000009923
UniProt:
A0A8C1ID74
LinkDB
All DBs
Position
B22:22094444..22113614
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AA seq
1080 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IEQLPVNTALLQLVSGQVPKAPPITLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGAVQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGPALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFCTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLEFL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHTQEELEKYRKMNKRLGMRRQLSQSLTQLNEMDLGAGLLPDDG
PMMEGLPRKHSSITNVILAAGHDSTLAHLVSRGSDPSYDPTHKPGKMDSGSLSAPGSPPD
SLESIPKAGMLINSHSRITGEGAVGQKHMSAVPRVPHMYSPHQSERYYSDTRGPLPPSAQ
YESSQYPAGNPYPHHHVHPRYARHLTPDPGMPPYPESYSSSYTSERQCANPSSHYGYPSH
HDGRRHSAYTHPQTFPPREELVRRSPDVPPPLPPQNASYLPEPDNYNHSSHIRNYPRNAY
TRPQPSLDYLHRRRQEIMAQLEERKVASPSPFSSSHSYDPSYPQDTRGQSHYMEDNSHSF
GHFQEPDYTSSYSPWSCDTFGSYIGSKDIKSKEGMNSMDTQNIDKGKNLRAHGLELQRRA
ADVKDDDPIIPFGSLPTVSRFGAISRTSKPGYPPNSPMPPMPNSAKHTASAAEYTYAKHS
GWTGESYQPHQTSQGHFSERSSVSPAVQVREQLRMELQQVNLQISQQTQSRGLENSSSVM
SQPSRVDWSSGNLNSEQLSLELHQVERDIVMRTQEMAMENHDGKYKRVSVENGQDEHTLQ
RDEHPLTLSEGSNGSIGLAQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGVVHS
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacacaaacc
ttcgaggagagccaccggaagcccatcagcctgggctgtggccacactgtgtgcaaaatg
tgcctgaacaaactgcaccgcaaggcctgtccgttcgaccagaccaccatcagcacggac
atcgagcagctgcccgtaaacacagcgctgctgcagctcgtcagcggacaggtacccaaa
gctccccccatcactttactgacagctgcagaggacgtcaagcactatgaggagtctcgc
acatgtgtggaggacctggccctctatctcaaacccctgagcaacaccagaggtgcagga
ctgaatggtgccgttcagagcgttctcagcagacccatgcagaggaagctggtgactctg
gttcactgccagctggtggaggaggagggccgcatccgggccatgcgggcggcccgctct
ctgggtgaacgtactgtcactgagctcatcctccagcaccagaacccccagcagctctcc
tccaacctgtgggccgccgtcagagccagaggctgccagtttctcggccctgctatgcag
gaagaagcactgaagctggtcctgctcgctctggaagatggtccggccctctcacggaag
gttctggtcctgtttgtggtccagagactcgaaccacgttttcctcaggcctcgaaaaca
agcataggacacgtggtgcagctcctctacagggcctcctgctttaaggtgaccaaacgt
gacgaagattcctccttgatgcagctgaaggaggagttttgcacgtacgaggctcttcgg
agggaacacgactctcagatcgttcagatcgcgatggagggcggactgcgtatcgcccct
gaccagtggtcatctctactgtacggcgaccagtcgcacaaatcccacatgcagtccatc
atagacaagctgcagacaccagcatcctttgctcagagtgtgcaagaactcaccatcgcc
cttcagagaaccggagatccagccaatctcaaccgcctcagaccccatctggagttcctg
gccgacatcgaccctagtccagatgcccctgcacccacatgggagcagctagccaaaggg
ctggaagcggtgcggaccgtcgttcacggcctggtggatttcatccagaaccacagcaaa
aaaggaggagatcagcagcagccacctcagcacagcaaatacaagacctacatgtgtcgg
gacatgaaacaaaaaggcggctgtcctcgcggtgcaagttgcacttttgctcacactcag
gaagagcttgaaaagtaccgtaagatgaataaacgtttgggaatgaggcgacagctcagc
cagtccctgacccagctgaacgagatggacctcggcgccggtctgttgcctgacgatggg
ccgatgatggagggactcccacgcaaacactcgtccatcactaacgtcatcctagcagca
ggacatgattccaccttggcacaccttgtttccagaggctcggacccgtcatatgaccca
acacacaaaccagggaagatggactctgggagcctcagtgctcctggctcacctccagac
tcattggaatccatcccaaaagcagggatgctcataaattctcactccaggataacaggc
gaaggcgctgttggacagaagcacatgtctgcggtgcctagagttcctcacatgtactca
ccacaccagtctgaacggtattactctgatacaagaggccctctgccaccctctgcccaa
tatgaatcctcccagtaccctgcaggtaatccttatcctcaccaccatgtgcacccacgc
tacgcccgccacctgactccagatccaggcatgccaccatatccggaatcctattccagc
tcctacacttcagagcgccagtgcgccaaccccagctcccattatgggtacccttcacac
cacgacggccgtcgccactcagcctacacccatccccagacattccccccacgggaggaa
ctggtgcgaaggagtccagatgttcccccgccgctaccaccccaaaacgcttcgtacctg
ccagagccggacaactataaccactccagtcacatcaggaattacccgaggaatgcctac
acacgacctcagccctccctagactacctgcaccgccgaagacaggagatcatggcccag
ctggaggagagaaaggtggcttccccgtcgccgttcagctcctcacactcatacgacccc
agctaccctcaggacacgagggggcagagccattacatggaagacaactcccacagtttt
ggacacttccaggaaccagactacaccagctcgtattcgccgtggtcatgtgacaccttc
ggttcctacattggcagcaaagatataaagtccaaggagggcatgaactccatggacaca
caaaatatagacaaaggcaaaaatctgagagcgcatggcttggagcttcagcgcagagcg
gcagacgtcaaagacgacgaccccatcattccctttggctccctgcccaccgtgtctcgt
tttggagccatctcgcgcacgtctaaaccgggctatccgccaaacagtcccatgccaccc
atgccaaactcagccaagcacaccgcttcagctgctgaatacacctatgcgaagcacagc
gggtggactggcgagtcctaccagccacaccaaacgtctcaggggcacttcagcgagcga
tccagtgtatcccctgccgtgcaggtgcgtgagcagctgaggatggagctacagcaggtc
aacctccaaatcagccaacagacgcagagtcgcggcctagagaactcgagctcagtcatg
tcccagccgtctcgagtggactggtcgtctgggaatttgaacagtgaacagctgagtctc
gagctgcaccaggtggagagagatattgtcatgaggacacaggagatggccatggagaac
cacgatggcaagtacaagcgggtctctgtggaaaatggacaagatgaacacactctgcaa
cgagatgaacatccactcactcttagtgagggctcaaacggctccatcggtttggcccag
gactgtggtctcgtcagcagcagcatgtcctcgctgaccagcaagacatcatctctcagt
ttgtcctccgaacaggtggccagcagccctgatttgcccaagaacggagtcgtccactcc
tag
DBGET
integrated database retrieval system
