Cyprinus carpio (common carp): 109047538
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Entry
109047538 CDS
T05134
Symbol
col18a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccar04147
]
109047538 (col18a1a)
00535 Proteoglycans [BR:
ccar00535
]
109047538 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109047538 (col18a1a)
Exosome [BR:
ccar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109047538 (col18a1a)
Proteoglycans [BR:
ccar00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109047538 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109047538 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
109047538
NCBI-ProteinID:
XP_042620391
Ensembl:
ENSCCRG00000008927
LinkDB
All DBs
Position
A9:23193514..23226633
Genome browser
AA seq
1363 aa
AA seq
DB search
MSKLRFWLCLFILVCLRICHTHGWFWFDDSKENMKGAQTPAYLTTTRPTSPPRTEPPRTA
EESGVSLLQLIGDPPPVGVSKVFDHDNSPGYVFDQSSNVGQSAAAHLPNPFFRDFSLIFN
IKPTSSKPGVIFSITDPTQNIMYVGVKLSAVEKGKQYIIFYYTEPDSESSYEAARFSVPS
MVNTWTRFSISVLNERVSLYFNCDSDPQVISFERSPDDMDLDVGAGVFVGHASGADPNKF
LGVIGDVRVLKDPGAAERHCEEDEDDFDAGSGDYGASGDGEGRPSIQPTPPSSRPIQQPP
VTSRPLVEKQLTGGKGEKGDRGEKGAKGERGLVGPKGDLXCCCCGGGEEEEGDPGEKGMK
GSSGFGYPGSKGDRGPPGPPGPPGPPGPSAEVELRGDGSVLQKVAGPRGPPGPVGPDGGA
GGDGGAGDPGEDGKAGQVGPPGFPGTPGSPGPKGEKGERGESQPGPRGPPGLPGPPGPPS
LSDRPTFVDMEGSGFDLDSVRAMPGLPGLPGPPGPPGLPGPPGPGSSGPGGFGPPGPPGQ
NGAPGQPGLPGTPGADGKPGLTGPKGEKGDSGELGLPGPVGEKGAKGSSGSPGLPGEGGL
AGLPGPMGPVGPPGPPGPPGPRYHVGFDDMEGSGVHFSSVPGLRGPVGIQGPPGVPGPQG
TPGFPGFPGEKGSEGPQGKDGQPGLDGFPGPQGPKGNKGDRGDRGEPGRDGAGLQGPPGP
PGPPGQIIYGYSENNDGGAGPRGGAGLPGQAGFPGPWDQRVSEENLVHQATALRFGEKGE
PGLILGPDGNPLYHGGLTGLKGESGLPGPVGPPGPAGPPGLKGEFGMPGRPGRPGVNGYK
GEKGESGSGSGYGYPGPPGPPGPPGPPGPALPLDRFSRYEDYSRQYPAIKGDKGDQGAPG
VPGSPGFSSNVDIYALKNEMKGEQGEPGLKGEKGEPGGGFYDPRFGAVQGPPGNPGPTGP
KGDSIRGPPGPQGPPGAPGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPQLSIPGPPGPP
GPPGVSGTGSGVTFLRSYDIMMATARRQSEGALIYILDRNDLYLRVRDGVRQVMLGDYKT
FYGELDNEVAAVQPPPVVHYSQDHTADNGAEQISPPHQPIEFPRREPENRNPSPTDSRYP
DPQYPPYTDPVQPHRHPVQPERNPITPARRPSPPVNQPEGHTHTSGPGLHLIALNSPQVG
NMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRRSDRETLPIVNLKDQVLFR
SWESLFSDSESRMKDNAPIYSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAG
DRAVTGLASSLQAGQLLQQTSSSCSSSYIVLCIENSYMTQSKK
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagctcaggttttggctttgcctctttattctggtgtgtttgaggatatgccac
acacatggctggttttggttcgatgactcaaaagaaaatatgaagggcgcacagacaccg
gcctacctgacaaccacaaggcccacatcaccaccgaggacagaaccgcccagaacagca
gaagaaagtggagtgtcgctgttgcagttaattggtgatcctccacctgttggtgtctcc
aaagtctttgaccatgataacagccctggctatgtgtttgaccaaagctccaatgtgggt
cagtcagctgcggcccacctgcccaaccctttcttccgtgacttctcccttatcttcaac
ataaaacccacatcctccaagcctggtgtcatcttctccatcactgacccaacccagaac
atcatgtatgttggtgtgaagctgtcagcagtggagaagggcaagcagtatatcatcttc
tactacactgagccagactctgagagctcatacgaggcggccagattttccgtgccctcc
atggtgaacacctggacccggttttccatcagtgttttgaatgagcgtgtttccctctac
ttcaactgtgactcagatcctcaggtcatctcttttgagcggtctccagatgatatggac
ctggatgtcggggctggagtgtttgttggtcatgccagtggagcagaccctaataagttt
ttgggtgttatcggcgatgtaagggttttgaaagaccctggggcggctgaacggcactgt
gaagaagatgaggatgactttgatgcgggatcaggtgattacggagcaagtggagatgga
gaaggacgaccatcaatccagccgacacctccctcctctcggccgatccagcagccgccg
gtgaccagcagaccacttgttgagaagcagctgacaggtggaaaaggagagaaaggagac
agaggagagaagggtgctaaaggtgagaggggtcttgtgggaccgaagggtgatttatga
tgttgttgttgtggtggtggtgaagaagaggagggtgacccaggagagaaaggaatgaag
ggtagttctggttttggttatcctggatcaaagggtgatcggggccctcctgggcctcca
gggcctcctggtcccccagggccaagtgcagaggtagaattgaggggagatgggtcagtg
ttgcagaaggtggcaggaccaagaggaccacctggaccagtaggaccagatggaggtgct
ggtggtgatggtggggctggtgaccctggtgaagatggaaaagctggccaagttggacct
cctggttttccaggaactcctgggagtcctggacccaaaggagagaaaggagaacgaggt
gaaagtcaaccaggacctcgagggcctccagggcttccaggtccaccgggacccccatct
ctctctgataggcctacatttgtggacatggagggttctggatttgatttggacagtgtg
cgggcaatgcctggtttgcctggcctacctggtcctcctggtccccctggtctccctggt
cctcctggccctgggtcttcaggccctggtggttttgggcctccaggtcctcctgggcaa
aatggagctccaggtcaaccgggacttccaggtacaccaggtgctgatggaaaaccaggc
ttaacaggcccaaaaggagagaagggtgattccggtgagctgggcctacctggacctgtg
ggagagaagggtgccaaaggttcttctggttcccctggccttcctggagagggtggactt
gctggtcttccaggaccaatgggacctgttggaccaccagggccacctggtcctcctggc
ccaagatatcatgttggttttgatgatatggagggttctggtgttcacttcagttcagtc
cctggactaagaggaccagtaggaatccagggacctcctggtgtcccaggaccacaaggt
acgcctggtttcccaggatttcctggtgagaaaggcagtgaggggcctcagggaaaagat
ggccaacctggtttggatggcttccctggaccacagggaccgaagggcaacaagggagac
cgaggcgacaggggtgaacctggtcgagatggagctggacttcaaggtccacccggcccc
cctggaccacctggacaaattatttatggttattctgaaaataatgatggaggagcagga
cctcggggtggggctggtcttcctggtcaagcaggattcccaggcccgtgggaccaaagg
gtgtcagaggagaacctggttcaccaggctacggcattaaggtttggtgagaaaggagaa
cccggacttattcttggacctgatggaaacccactttaccatggtggactgacaggccta
aagggtgagagtgggcttcctggaccagtcggacctcctggtccagctggacctcctggt
ttgaaaggtgaatttggaatgccaggcagacctggtcgcccaggtgtaaatggatacaaa
ggagagaagggagagtcagggtcaggctctggatatggctacccaggtccccctggtccc
ccagggcctcctggtccccctggacctgctctgcccttggaccgattcagtagatatgaa
gattattcgagacagtatccagctataaaaggagataaaggagaccagggagctcctgga
gttccagggtcaccaggtttttcctctaacgttgatatctatgccctcaagaatgagatg
aagggggagcagggggagcccggtctgaaaggagagaaaggagagccaggaggaggattt
tatgaccctcgttttggagctgtacagggaccaccaggaaaccctggacctactggacct
aaaggagactcaatcagaggtccccctggaccacagggcccaccaggagcacctggtgtt
ggttatgatggtcgtccaggaaacccaggacctcctggaccccctggacctccagggtca
ccgtcattgccaggagcctacagaccacaactcagtattcctggacctccaggtcccccg
ggacctcctggagtttctggcactggatctggagtgactttcctgaggtcttatgacata
atgatggctacggcacgcagacagtctgaaggtgctttgatttacattttggacagaaac
gatctctacctcagagttcgggatggtgtcagacaagtgatgcttggagattataaaacc
ttctatggagagctggacaatgaagtggcagcggtccagccgccccctgttgttcactat
tcccaagaccacacagctgacaatggagcagagcagatttccccaccgcaccagccgatc
gagtttccaaggagggagccagagaatagaaaccccagtccgactgactcccgttaccca
gatccacaatacccaccttacaccgatcctgtacaaccacacagacaccccgttcaacct
gagaggaaccccatcactccagcccgccgccctagcccccctgtcaatcaaccagagggc
cacacccacacttctggaccagggttgcatcttatcgccctgaattctccacaagtgggt
aacatgagaggcattcgtggggcagacttcctgtgcttccagcaggctcgcgccgtgggc
ctgaagggaacattcagagccttcctgtcctccaaacttcaggatctctatagtatcgtc
cgcagatctgacagagagacattaccgattgttaacctcaaggatcaagtccttttcaga
agctgggagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatctac
tcatttgatggcagagatgtcctgcgggacagtgcctggccagagaagatgatctggcat
ggttccagtggcaggggtcacaggcagacggataattactgtgagacgtggagggccgga
gaccgtgcggtgacaggcttggcctcgtctctgcaggctggccaactcctccagcagacc
tccagcagctgctccagttcctacattgtgctgtgcatcgagaacagctacatgacacaa
tccaagaaataa
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integrated database retrieval system
