Cyprinus carpio (common carp): 109047726
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Entry
109047726 CDS
T05134
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109047726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109047726
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109047726
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109047726
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109047726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
109047726
NCBI-ProteinID:
XP_018956467
Ensembl:
ENSCCRG00000012607
ENSCCRG00000034679
UniProt:
A0A8C1Q0V8
LinkDB
All DBs
Position
A3:complement(17983160..17986522)
Genome browser
AA seq
269 aa
AA seq
DB search
MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPP
LPQQTQSQQKQQNTQPTNRSSQSLIQLTNTYVNNNQRMPNAAGIVHSNNNMGGPRGPRPL
DQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgcgagtgtcgatcatattaagtttgatctagaaattgctgtagaa
caacagttaggcgctcaaccattgccctttccaggaatggataaatctggcgcagctgtg
tgcgagttcttcatgagagcagcctgcataaaaggtggaatgtgtcctttcagacacatc
agtggagaaaagaccgtggtgtgcaagcactggcttaggggtttatgcaagaaaggagac
cagtgtgaatttttacatgagtatgacatgacaaagatgcctgaatgttatttctactct
aaatttggggagtgcagtaataaagagtgcccatttttgcacattgacccagaatctaag
attaaagattgcccgtggtatgataggggcttttgtaagcatggtccggattgcaggcac
agacacacaagaagagtcatctgtgtaaattaccttgtcggcttctgtccagagggcaag
tcatgcaaatttatgcacccaagatttgaactccctatgggtgcaactgaacagccacca
ttaccacaacagacacagtctcagcaaaagcagcaaaacacgcagcccacaaacaggtca
tcacagtcactcatccagttaaccaacacatatgtcaacaacaaccagagaatgccaaat
gctgctgggatagtgcactctaacaacaacatgggtggacctcgcggtcctcgtccactg
gatcaagttacatgttacaagtgcggtgagaagggccattacgcaaacaaatgcacaaaa
ggacacctggcatttttgagtggacagtaa
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integrated database retrieval system
