Cyprinus carpio (common carp): 109048439
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Entry
109048439 CDS
T05134
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109048439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109048439
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109048439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
109048439
NCBI-ProteinID:
XP_042602936
UniProt:
A0A9Q9XKS0
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All DBs
Position
B20:complement(13547994..13575860)
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AA seq
508 aa
AA seq
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MSTREVEKTAEESADDETDWLYGDDNFDEEETTEKEVFSALIGDVDGMNGLNYQESESDS
DDDVCVTIGEIKTGGSQASSFGSSSISLNINTSVSGSKSRGLGLDAEGNVLQVDVESFEE
KPWRKPGADLSDYFNYGFNEDTWKTYCDKQRRLRMSLEILSLGSSSKIMVHQNSSSDLSE
HSSRKLSGSINVNGGQAGTISRVEGRRRHSTDENNIQVVSEQSSDTELSSPKLLPFFPPN
IPPPPFPPPSIGTTQPLIPPPPGFPLPPGTPSPMIPPFNRLVSYRNWRERQRRCSRQRKQ
EHSKSLYRQKKEKKKDRERKGERRSGRLAGGFDRHSSYPFPAGVYSPAVGMASWSGVIDS
GKAWENYNRHNNERVREKTRERGHKKEQEHERERYRETNREHSPSSQDHRSEEEHVSRHR
DHSHYGSERYKKSSGREGMRDRHQERRRRDRNEQHRSSRSGSSRRRHDSDDADSHRRHRH
KRSRHNRGSLEPSEECSVDQENQSEATE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaagagaggtagagaaaacagctgaagagagcgctgatgacgagacggactgg
ctttatggagatgacaattttgatgaagaagagacaacagaaaaggaagtgttcagtgct
cttattggtgatgtggatggcatgaatggactcaattaccaggaaagtgaatcagacagt
gatgatgatgtctgtgtgaccatcggtgaaattaaaacaggcggatctcaggcatcttca
tttggttccagttccatcagtctgaacataaacacctctgtatcaggctccaagtccaga
gggctgggtctggatgctgaaggcaatgtcctgcaggtggacgtggagtcatttgaggag
aagccatggaggaagccaggtgcggatctgtctgactactttaactatggttttaatgag
gacacctggaagacatactgtgacaaacagagacgactacgcatgagtctagagatcctg
agcctggggtcatcaagcaaaataatggttcatcagaattctagtagtgatctgtcagaa
cactcatccaggaagttgagtggttcgatcaatgttaacggaggacaagcagggaccatc
agtcgagtggaaggcagaagacgtcacagcactgatgaaaataacatccaggtcgtgtca
gagcagtcctcagacacagagctatcttccccaaagctcttgcccttctttcctcccaat
atcccacctccacctttccctcctccctccatcggcaccacacaacccctcataccacca
ccacccggttttccattacctcccggtaccccttcaccaatgataccaccatttaatagg
cttgtgtcgtatagaaactggagagagagacagaggagatgtagcagacagagaaagcaa
gaacatagcaagtcactatacaggcaaaagaaggagaaaaagaaagacagagaaagaaag
ggagagagaaggagtggacgtttggcaggaggctttgatcgacactcatcttaccccttc
cctgcaggtgtgtattcacctgcagtgggcatggcttcatggtcaggtgtgatagacagt
ggcaaagcatgggaaaactacaaccgccataacaatgaaagggtgagggagaaaaccaga
gaaagaggacacaagaaagagcaagagcatgagagagagcggtatagagaaacaaataga
gaacacagtccgtcctcacaagatcacagaagtgaggaggagcatgtgtctcgacacagg
gatcacagtcattacggaagcgagaggtacaagaaaagctcgggaagggaaggaatgaga
gacagacatcaagaaagacgacgcagagacaggaatgaacaacacagatcctcacgcagt
ggcagcagtaggaggcgtcatgatagtgatgacgcagatagccacaggagacacaggcac
aaacgctctagacacaaccgaggaagccttgagcccagcgaggagtgcagtgtggaccag
gagaaccagtcagaggccacagaataa
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