Cyprinus carpio (common carp): 109049413
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Entry
109049413 CDS
T05134
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109049413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109049413
03009 Ribosome biogenesis [BR:
ccar03009
]
109049413
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109049413
Spliceosome [BR:
ccar03041
]
Complex A
U1 snRNP components
U1 related factors
109049413
Complex B
109049413
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
Pre-60S particles
Helicases
109049413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109049413
NCBI-ProteinID:
XP_042576568
UniProt:
A0A9Q9W4A2
LinkDB
All DBs
Position
B3:29259772..29264777
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AA seq
612 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRGGPPQGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHPDVARRTAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPNYVMDVISKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPGIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSGGRRDFNSYGQDNRNGDSYGQKKVFGNKTQNGSSGYNSSS
SSSFSGGYSNNGQGNFGNQSGGYGNQGYQNQQFAPNQGAVQNGMNHPPPFPFNPQQMPQS
MPFPMAPPTFPQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggtcgcgacagaggttacagcagtggcccccca
cgctttggaggcagcagaggcggacctccccagggcaagaagtttgggaatcctggtgac
cgtctgcggaaaaaacactggaacctggatgagctccccaagtttgagaagaacttctac
caggagcatcctgacgttgctcggaggacggctcaagaagttgaacactacaggagaagc
aaggagatcacagtgaagggtcgagacggtcccaaacccattgtgaagttccatgaagct
aactttccaaactacgtgatggatgttatcagtaaacagaactggaccgatccaactccc
atccaagctcaggggtggccagttgcactgagtggcaaagatatggtcggcattgcacag
accggctctggaaaaactctctcatatctgcttcctggtattgttcacataaaccaccaa
ccattccttgagcgtggagacggtcccatttgcttggtgttggctcccacccgtgaattg
gcgcagcaggtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtccacc
tgcatctatggaggtgctcccaaaggaccacagatccgggacctggaaaggggtgtcgag
atttgcatcgccacacctggaagacttatcgatttccttgaagttggaaagacaaatctg
cgcagatgcacatatcttgtgcttgacgaagctgacaggatgcttgacatgggatttgaa
cctcagatccgaaaaatcgtggaccaaattagaccggaccgacagactctcatgtggagc
gctacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgttggtgctctgcagctcagtgccaaccacaacatcctacagattgtcgacgtt
tgcaacgatggtgaaaaggaagacaaactgatgcgcctgctggaggaaatcatgagcgag
aaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcaccagg
aggatgcgcagggatgggtggccagcaatgggcatccatggagacaagagccagcaggaa
agagactgggtgctcaatgaattcaaatacggcaaagcgcccatcctcattgccacagat
gttgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaaccggc
acggcctacactttctttacgcccaacaacatgaaacaggctcacgacctcgtctctgtc
ctccgcgaggccaaccaagccataaaccccaagctcatccagatggctgaagacagagga
ggtcgttccaggggtggtcgaggtggagggtatagggatgaccgccgggatcgccactct
ggcggcaggcgggacttcaacagctacggccaggataaccgcaacggtgactcttacggg
cagaagaaggtgtttggaaacaaaactcaaaacggatctagcggttacaatagcagcagc
agtagcagctttagcgggggttatagcaataacggacagggtaacttcggcaatcagtct
ggtgggtacggaaaccaaggctatcagaaccagcagtttgctcccaaccaaggggccgtc
cagaacggcatgaaccaccctccaccattccccttcaacccccaacagatgccacagtcc
atgccgttccccatggctcctcccacattccctcagtaa
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