KEGG   Cyprinus carpio (common carp): 109050124
Entry
109050124         CDS       T05134                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109050124
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109050124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109050124
   03041 Spliceosome [BR:ccar03041]
    109050124
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109050124
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109050124
Spliceosome [BR:ccar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109050124
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 109050124
NCBI-ProteinID: XP_018923337
Ensembl: ENSCCRG00000004666
UniProt: A0A8C1A3V5
LinkDB
Position
A11:complement(7661215..7666291)
AA seq 147 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVISKGRGRGGMQQNKPQGKGRAGVPGRGGGAGRGIFGG
RGRGMPGTGRGQQDKKPGKPQGVKNQH
NT seq 444 nt   +upstreamnt  +downstreamnt
atgctcccgttatctttactgaagacagcacagaaccaccctatgctggtggagttaaag
aatggtgagacgtacaacggccatctggtcagctgtgacaactggatgaacatcaatttg
agagaagttatttgcacctcacgggatggagataaattttggaggatgccagagtgctac
atcagaggaagcaccattaaatacttacgaatccctgatgagatcatagatatggtgaaa
gaggaagtgatatcaaaggggcgtggccggggaggcatgcagcagaacaagccacaggga
aagggcagagcaggtgtacctgggagaggcggtggagccggcagaggtatttttggtggc
cgtggcagaggcatgccgggaactggccgtggacagcaagacaaaaagcctggaaaacca
caaggtgtcaaaaaccaacactag

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