Cyprinus carpio (common carp): 109050556
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Entry
109050556 CDS
T05134
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109050556
09122 Translation
03013 Nucleocytoplasmic transport
109050556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109050556
03041 Spliceosome [BR:
ccar03041
]
109050556
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109050556
Spliceosome [BR:
ccar03041
]
Complex C
Other components
EJC/TREX
109050556
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109050556
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
109050556
NCBI-ProteinID:
XP_042593759
LinkDB
All DBs
Position
B14
Genome browser
AA seq
1549 aa
AA seq
DB search
MAALILPSDWIKNWDKSGKNEFFQFFQDLAGKPSSNEFVKDLQTALYELCWHVIQGSLKV
DVAAGLLADVLELRDDMPSILADVFCILDIETGCLEEKHKRDHFTQLVGTCLICVPDGML
KERLDPETLESLGLIKQAQQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNLTSHLVLENIKSLIGCFNLDPNRVLDIILEVYECRSEHDEFFIPLIKSYMCEHQTLC
HMLGFKFKFHQEPNGETPSSLYHIAAALLQHNLIALEDLYVHLLPLDSSIVEEHKREILE
AKQIARKLTMVLVPSEKTEDKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWQHAQSIMDQ
MPAFYATSHKAIAIALCQLLHLIVEPLYRRAAVPKGAKGSLMMPLWSKQALRPAESFDDL
SRGVFTMLCYLGPHLSHDPILFAKIVRLGKSFMKEFQSESRQDTKDRMDSLLSCFLSIAD
QVLLPSLSLMECNACMSEELWGFFKLFPYQHRYRLYGQWKNETYGNHPLLVKIKAQTVDR
AKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLITPVVDSLKYLTSLN
YDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNQL
KAGKSFDLLILKEVVQKMAGIEITDEMTVEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQR
LKDALLDHELALPLCLLMAQQRNGVVFSEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNL
STEDYIKRVPSVDVLCNQLHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKVHK
YIAACEQIMAPVHEAVVSLHLPKVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVNKLKM
QIKAIDENTEMPLNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAKS
TKNETITKFLQLCIFPRCVFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYTV
ASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRASGFDGGNKADQL
DYENFRHVAHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALECRV
HKICQEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATPGTLQNGPGNT
GKPAVTAAASTGKAEEGAVEDSDKSKDKSQAVQKTASKNSTAANKVNNSNGSSTPNSTKG
SKEKEDKEKTTKEKKEKKDKNPGSTPEAKAGGKDKQKEEKPTDSKEKTPKADKDKRKDDK
KEEKSKIDGKSAEKEWSKERDVSNDSKTKEGSKVEKSAGAGSMKSLVPRSEGVESERAEQ
KRRKLDTHSSPSHSSAVKDNLNDFKDSASKHHPNHSTVLPKSKEKDDEKKESDKSRDRSK
EREKKEDRKDRKRDYSNSDREMSLEAKRRKDENGMSSSKHSKSTSPSGSPHSNDKDSSKR
SKDKSDLAKPEKTSGGKKESRHDKEKSEKKRDSTGAKEEKKHHKSEKHR
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgatcctcccgtctgactggataaaaaactgggacaaatccggcaaaaat
gagtttttccagtttttccaggaccttgcggggaaacccagcagtaacgagtttgttaaa
gatctgcagacagccctgtatgagctctgctggcatgttatccagggcagtctgaaggtg
gatgtggctgccggtctcctggccgatgttctggagctgcgggacgatatgccctctatt
ttagctgatgttttctgtatattagatatcgagactggctgtttggaggagaaacacaag
cgggatcattttacccagctggttggaacctgtttgatctgtgttcctgatggtatgctg
aaggagagattagatccagaaacgctggagtctctggggctgatcaaacaggctcagcag
ttcaaccagaagattgttaaaatcaagaccaagctattttacaaacagcagaagttcaat
ttgttgcgcgaggagaatgaaggttacgctaagctgatcacggagcttgggcaggatctg
tccgggaatctcaccagccacctcgtccttgagaacatcaagtcattaataggatgtttc
aatctggacccaaaccgtgtgctggacatcatcttggaggtgtacgagtgtcgctctgag
cacgatgagttcttcatccctctgatcaagtcctacatgtgcgagcaccagaccctctgc
cacatgctgggcttcaagttcaagtttcaccaggagcctaatggagaaacgccatcatct
ctgtaccacatcgctgcagctcttcttcaacacaacctcatcgctcttgaagacctctac
gttcatctcctcccactggattccagcatcgtggaagagcacaagagagagatcctggag
gccaaacagatcgcccgcaaactcaccatggtgctcgtcccctccgaaaagactgaggac
aaggagaaggagaaggaagaggaaaagaatgagaagcctcctgataaccagaagctgggg
ctgctggaggcgctgctgaggatcggtgactggcagcacgctcagagcatcatggatcag
atgccagctttctacgccacctcccacaaggccatcgccatcgcactgtgccagctgctg
cacctgatcgtggagccgctctaccgcagggctgcagtccccaaaggtgccaaaggaagt
ttgatgatgcctctgtggagcaaacaggcactgcggcctgccgaaagctttgacgatctc
tccaggggcgtcttcaccatgctgtgctacctgggccctcacctgtcccacgaccccatc
ctgtttgccaagatcgtgcgactgggcaagagtttcatgaaagagttccaaagtgaaagc
aggcaagacaccaaggacagaatggactctctgctgagctgttttctcagtattgctgat
caggtgctgttaccgtctctctcgctcatggagtgcaacgcctgcatgtccgaggagctc
tggggcttctttaaactcttcccctaccagcacaggtatcgcctctatgggcagtggaag
aatgagacgtacggcaatcatcctctcctggtgaagatcaaggctcagacggtcgaccga
gccaaatacatcatgaagcgactgactaaggagaacgtgaagccctcaggaaggcagatc
ggaaagttaagccacagtaaccccaccattctctttgattatattctgtctcagatccag
tggtacgataacctcataactccagtggtggactctctcaaatacctcacctccctcaac
tatgatgtgctggcctattgcattattgaagctttagccaacccagagaaagagaagatg
aaacatgatgacaccaccatttcatcatggctgcagagtctcgctagtctgtgtggagcg
gttttcaggaaatatcccatcgagttagctggtcttctgcagtatgtgaccaaccagctg
aaagctggcaagagttttgacctgctgatcctgaaggaagtggtgcagaagatggcaggg
attgagatcacggatgaaatgactgtggagcagctggaggccatgaccggtggagagcag
ctcaaagcggagggtggctactttggacagatcaggaacactaagaagtcgtctcagcgc
ctgaaggatgctcttctggaccacgagctggcgttgccgctgtgtctcctgatggcccag
cagaggaacggggtggtcttctctgaggggggagagaagcaccttaaactcgtggggaag
ctttacgatcagtgtcacgacactctcgtacagtttggtggcttcttggcatctaacctc
agcactgaagactacatcaaaagggtgccgtcagtcgatgtcctctgcaaccagttacac
acgccacacgatgctgctttcttcctgtctcggcccatgtatgcccatcagattctgtcc
aagtatgacgagttgaagaaggcagagaagggcaacaggcagcagcagaaggtccataag
tacatcgcagcctgcgagcagatcatggcccctgtgcacgaggctgtcgtgtctcttcac
ttgcccaaagtgtgggatgaccttcgacctcagttctatgccaccttctggtccctcacc
atgtacgacctggcggtaccacacaacgcctacgaccgcgaggtcaacaagctgaagatg
cagatcaaggctattgatgaaaacacggagatgcctctgaataaaaagaagaaagagaag
gagcgctgcacagcgctgcaggacaagctgcaggaagaggagaagaagcagctagagcat
gtgcagagagttctgcatcgtctcaaactggagaaagacaactggttactcgccaaatcc
actaagaatgaaaccatcactaagttcctgcagctctgcatcttcccccgctgcgtcttc
tcagccattgatgccgtttactgcgctcgcttcgtggagctggtgcaccagcagaagacg
cccaacttctgcaccctgctctgctacgaccgagtgttctctgatatcatctacacggta
gcgagctgcacagagaacgagtcgcgccgctacggccgctttctgtgctgcatgctggag
actgtgactcgttggcacagcgacagagccgtctatgagaaggaatgtggcaattatcct
gggttcctgactattttccgagccagtggtttcgacggagggaacaaagcagatcagctg
gactatgagaatttccggcatgttgcccacaaatggcattacaagttgactaaagcgtcg
gttcactgtctggagacgggcgagtacacccacatccgcaacatcctgatcgtgctcacc
aagatcctaccctggtaccccaaggtgctgaacctgggccaggctctggagtgccgcgtt
cacaagatctgccaggaggagaaagagaagaggcccgatctctatgcgttagccatgggc
tactctggccaattgaaaggcaggaaagtgcacatggtgccagaaaatgagttccaccat
aaggagcagccagtgcgcagcgccacgcctggcactctgcagaacggaccgggcaacacg
ggcaagcctgcggtcactgccgctgccagcactggcaaagccgaggagggcgccgtcgag
gactcagataaatccaaggacaaatctcaggcggttcagaaaactgccagcaaaaacagc
accgcagccaataaagtgaacaacagcaacggaagcagcacgccaaacagcactaaaggg
agcaaagagaaggaagataaagagaagaccacaaaggagaaaaaggagaagaaagacaag
aacccaggaagcactccagaggccaaggcaggagggaaggacaaacagaaggaggagaag
cccactgacagcaaggagaagacgcccaaggccgacaaggacaagaggaaggatgacaag
aaggaagagaagagcaagatcgatgggaaatctgctgaaaaagagtggtccaaggaacgc
gacgtgtccaacgacagcaagactaaggaaggcagcaaagtggagaagagtgctggggcc
ggaagcatgaagtccctcgtgcccagatccgaaggagtcgagtctgaacgggcagagcaa
aaaagacgaaagcttgacacacactcgtcaccgtctcactcctctgcagttaaggacaat
ctcaacgacttcaaggactccgcttcaaagcaccatcctaaccacagcacagtcctgccc
aagagcaaagagaaggacgacgagaagaaagagtctgacaaatccagggaccgttccaaa
gagagggagaagaaagaagaccggaaggaccggaaacgagactactcaaacagcgaccgc
gagatgagtctggaagccaagcgccgcaaagatgaaaatggaatgagctcctccaaacac
agcaagagcaccagcccctccggatcgccacactccaacgacaaggacagcagcaaacgc
tccaaggacaagagcgatctggccaaaccggagaagacctctggaggcaaaaaggaatcc
aggcacgacaaagagaaatccgaaaagaagagagacagcactggcgctaaagaagagaag
aaacaccataaatcagaaaaacacagatag
DBGET
integrated database retrieval system
