Cyprinus carpio (common carp): 109051085
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Entry
109051085 CDS
T05134
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
109051085 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109051085 (rag1)
Enzymes [BR:
ccar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109051085 (rag1)
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109051085 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_10
zf-RING_UBOX
zf-C3HC4_4
CaATP_NAI
Zn_ribbon_6
U-box
Motif
Other DBs
NCBI-GeneID:
109051085
NCBI-ProteinID:
XP_042609169
Ensembl:
ENSCCRG00000012065
LinkDB
All DBs
Position
B25
Genome browser
AA seq
1063 aa
AA seq
DB search
MEKGRWSSEDAPRASMPDELSHPKFSEWKFKLFRVRSMEKAPLPNETPVEKENQPEVAME
VAGSPGSVMKLCFGGKSKENMESARGRVDLKLQEIDTHMNLLKCLCRLCGLSIRKAKGPS
HEVQGDLKESSRCALRRMGCKFLTWPEVILKVFKVDVTTDMETVHPSLFCHRCWTAAMRG
GGFCSFTRTQIPDWKPHTSNCDLCFPKKSSFQRIGRKRAKPLKSAHSLPKRIKRDSSEFS
GANRVWRQTTENILGSGGKEWLKLSVQRGQWVKNITQCQRDHLSTKLIPTEVPADFIRAV
TCQVCDHLLSDPVQSPCRHLFCRVCILRYSHALGPNCPSCNQHLNPSHLIRPAKFFLATL
NSLPLLCPREGCSDWVRLDSFKEHCLNHYHEKESQEDQTPSDQNIDGYLPVNKGGRPRQH
LLSLTRRAQKHRLKDLKNQVKVFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADELEAMM
QGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPGFH
QFEWQPALKNVSSSWDVGIIDGLSGWTTSVDDVPADTISRRFRYDVALVSALKDLEEDIM
EGLRERELDDSICTSGFTVVVKESCDGMGDVSEKHGCGPAVPEKAVRFSFTIMSISIRVE
GEDDGITIFQEQKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMIESRLILSVG
GLLRSFRFLFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDE
NLERYEIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEI
GEVYQKSNPSREERRRWRSALDKQLRKKLKLKPVMRMNGNYARRLMTREAVDVVCELVPS
EERREALQKLMDLYLQMKPVWRSTCPSRDCPVQLCQYSYNSQQFADLLSTTFKYRYDGKI
TNYLHKTLAHVPEIVEREGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDILKHHW
LYTSKYLQKFMEAHKNSAKAMQATFNPEETPDEVDIALEVPDF
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaggtggagttctgaagatgctcccagagcatccatgcctgacgaactg
tcacatcctaagttttcggaatggaagtttaagctctttcgggtcaggtccatggagaag
gcccctctgcctaatgaaacaccggtggagaaggaaaaccagcctgaggtagcaatggag
gtggcaggctctccaggcagtgttatgaagctctgttttggagggaagagtaaggaaaac
atggagagtgctcgagggagagtggaccttaagctgcaggaaattgatacacatatgaat
cttctcaaatgcttgtgtcgcctttgtggcctttcaatacggaaggctaaaggtccgtcg
catgaagtccagggagacttgaaagagtccagtcggtgtgccttgcgtaggatgggctgc
aagtttctgacctggccagaagtgatcttgaaggtcttcaaggtggatgtgacaaccgac
atggagacggtgcatccatctttgttttgtcacagatgctggactgctgccatgagggga
ggaggtttctgttctttcactaggacccagatcccagactggaagccccacacctccaac
tgcgacctctgcttccctaagaagagctcttttcagcgaataggaaggaagcgggctaaa
ccacttaaaagtgcacacagccttccaaagagaatcaaaagggactcctcagaattctca
ggggccaatagagtgtggagacagaccacagagaatattttgggatcaggtgggaaagaa
tggttaaaactatcagttcagagaggacagtgggtaaagaatatcacacaatgccagagg
gaccatctgagcactaagctcatccccaccgaagtcccagcagacttcatacgtgctgtt
acttgccaagtatgtgatcatctgctttctgaccctgtccagtcaccgtgtagacacctg
ttctgtcgggtctgcatcctaagatacagtcatgctttgggcccaaactgtccctcctgt
aaccaacatctaaatccatcccacctgatcaggccagccaaattcttccttgccaccctc
aactctctacctctactctgccccagagaaggatgcagcgactgggtccgattggactcc
tttaaggaacactgcctcaaccactaccatgaaaaagagtctcaagaagaccaaacacct
tcagaccagaatatcgatggttacttgccagtcaacaaaggtgggcgtcctcgacagcac
cttctgtcactgacccgtcgggctcaaaagcacaggctgaaagacctgaaaaaccaggtg
aaggtttttgctgaaaaggaagaaggaggggatgtgaagtcagtctgtttgacgctcttc
cttctagcgttgagagctgggaatgaacacaaacaagcagatgaactggaagctatgatg
caaggcaggggatttgggctgcatcctgcagtgtgtttggctataagggtaaacaccttc
ctcagctgcagtcagtaccataagatgtaccgcactgtaaaggccactagtggtcgccag
attttccagcccctgcacactctacgtaatgctgagaaagagcttcttcctgggtttcac
cagtttgagtggcagccagctttaaaaaatgtttccagctcctgggatgtgggcatcatt
gatggcctctctggttggacaacctctgttgatgatgttcctgcggacactatctccaga
agattccgttacgatgtggcactggtttctgcattaaaagatttggaggaggacataatg
gaaggactgagagagagggagctagatgacagcatatgcacctccggttttaccgttgtg
gtgaaagaatcatgtgatggtatgggagatgtcagcgagaagcatggatgtggtccagcg
gttcctgagaaggcagtgaggttttccttcacaatcatgtccatctccatccgagttgag
ggtgaagatgatggcatcaccatctttcaggaacaaaagccaaactctgagctctcctgc
agacctttgtgcctcatgtttgtggatgagtccgatcatgagaccctaacggccatcttg
ggccctgtggtagcagagcggaaagccatgatagaaagtcgccttattttatcggttggt
ggtctgctacggtcctttaggttcttattccgggggacaggctacgatgagaagatggtt
cgtgaaatggaaggcctagaagcatcaggctccacttacatatgcacactttgcgactca
acccgagctgaagcctctcagaacatggtgctacattccatcacacgtagccatgatgaa
aatcttgagcgctatgaaatctggaggaaaaatcctttctcagaatctgctgatgagctc
cgtgaccgggtcaaaggtgtttctgccaagccattcatggagacccagcctactctagat
gccctgcactgcgacattggcaatgctactgaattttacaagatctttcaggatgagatt
ggcgaagtctaccagaagagcaatccgagtcgagaggaacgccgtcgttggcggtcagcc
ctggacaaacagctaagaaagaagctgaaactcaagcctgtaatgaggatgaatggaaac
tatgctcgtcggctgatgacacgtgaagctgtggatgtggtctgtgagctggttccttct
gaggaacggcgtgaggcactacaaaaactgatggacctctacctccagatgaagcctgtg
tggcgttccacctgtccctcccgagactgccctgtccaactttgtcaatacagctacaac
tctcagcaatttgctgatctgctttccaccacatttaagtaccgttatgatggaaaaatt
accaactacctccacaagactctggcccatgttcctgagattgttgagagagaagggtct
attggagcatgggccagtgaaggcaatgagtctgggaacaagctgttcaggcgttttcgg
aagatgaatgcaaggcagtccaaaacatttgaacttgaagatatacttaaacaccactgg
ttgtacacctccaagtatcttcagaaatttatggaggctcacaagaattcagcaaaagca
atgcaggccacattcaacccagaagagaccccagatgaagttgatatagctcttgaagtc
ccagatttttga
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