KEGG   Cyprinus carpio (common carp): 109051737
Entry
109051737         CDS       T05134                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03030  DNA replication
ccar03410  Base excision repair
ccar03420  Nucleotide excision repair
ccar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109051737 (rfc4)
   03410 Base excision repair
    109051737 (rfc4)
   03420 Nucleotide excision repair
    109051737 (rfc4)
   03430 Mismatch repair
    109051737 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccar03032]
    109051737 (rfc4)
   03036 Chromosome and associated proteins [BR:ccar03036]
    109051737 (rfc4)
   03400 DNA repair and recombination proteins [BR:ccar03400]
    109051737 (rfc4)
DNA replication proteins [BR:ccar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109051737 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    109051737 (rfc4)
Chromosome and associated proteins [BR:ccar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109051737 (rfc4)
DNA repair and recombination proteins [BR:ccar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109051737 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    109051737 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_11 AAA_30 AAA_14 DUF815 Mg_chelatase AAA_5 SLFN-g3_helicase RuvB_N Gp44_lid AAA_19 AAA_24 Kinesin AAA_28 ResIII AAA_7
Other DBs
NCBI-GeneID: 109051737
NCBI-ProteinID: XP_042590633
UniProt: A0A8C1LNG3
LinkDB
Position
B11:complement(24552165..24560859)
AA seq 355 aa
MQAFLKGSQSVKAQKPSSSSSAGEKKQKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEG
ADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKSFAQ
LTAAGARPDGKPCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIE
PLTSRCSKFRFKPLANHIQQERLLQICGKENLKYTTEGIEALVKVSEGDLRKAITYLQSA
ARLNTEQEITEQIIIEIAGVVPPKVIEALLQICCRGTFEKLELAVKDMIDQGYAATNVLN
QLHDVIIDEKLSDKQKSVITEKMAEVDKCLSDGADEYLQLLSLCSVIMQQATHST
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgcaggcgtttctgaaaggatcgcagagtgtgaaagctcagaaaccctcctcttcatct
tcagctggagagaagaagcagaaggcggtgccctgggtggagaaatacaggccgaagtgt
gtggatgaagtggccttccaggaggaggtggtggcagtactgaagaagtctctagagggc
gctgatctgcccaacctgctgttctacggtcctcctggaaccggaaagacgtccaccatc
ctagcggccgccagagagctttatggaccggagctgtaccgtcagagagtcctggagctg
aacgcgtctgatgaacgagggatacaggtgatccgagagaaggtgaagagcttcgctcag
ctgactgcagccggagcacgtccagacgggaagccctgtcctccgtttaagatcatcatc
ctggacgaggcggactctatgaccggcgcggctcaggcggctctcagacgcaccatggag
aaagagtctcggaccacacgattctgcctcatctgcaactacgtcagccggatcattgag
ccgctgacctccagatgctccaagttccgcttcaaaccgctggccaatcacatccagcag
gagcgtctgctgcagatctgcgggaaggagaacctcaagtacaccacagagggcatcgag
gctctggtgaaggtgtcggagggagatctcaggaaggccatcacttacctccagagcgcc
gccagactcaacaccgagcaagagatcaccgagcagatcatcatcgagatcgccggggtg
gttcctcccaaagtgatcgaggcgctcctccagatctgctgcagaggcacgtttgagaag
ctggagctcgctgtgaaggacatgatcgatcagggatacgccgccaccaacgtcctcaac
cagttacacgacgtcatcatcgacgagaagctgagcgataaacagaagtctgtcatcacg
gagaagatggctgaggtggataagtgtctgtcagacggcgcggacgagtatctgcagtta
ctgagtctctgctccgtcatcatgcagcaggccacacacagcacctga

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