Cyprinus carpio (common carp): 109053150
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Entry
109053150 CDS
T05134
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109053150
03036 Chromosome and associated proteins [BR:
ccar03036
]
109053150
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109053150
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109053150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
109053150
NCBI-ProteinID:
XP_042613410
UniProt:
A0A9Q9Y4B4
LinkDB
All DBs
Position
A6:1031157..1045313
Genome browser
AA seq
2005 aa
AA seq
DB search
MEDKKRKKEDKRKRETSQKVAEQKNKVPELTKPPSAQSPVTPNSASPSPGPVPSSTPSTA
TPAAGALPQGGNNAKRPVVANGQPSPGTQNSQRYMPREVPPRFRCQQDHKVLLKRGQPPL
SSMLLGGGNSGGDSPNETVASASEVMQVWNGIDPSQGPVGPAAPSLPHTSSSSSIAASSS
SNYANSMWGTSSGSQPPSQGREKVIVDRSDLEEWPSIAAGDGSKVVDTAGTGGADSSGIL
NRSASWGERHLQQQAKVVGGGNGRKGVNSSSPSPPTSSGSPNECMQSGSVWASSSHELIV
GNAVAACSLPPISKAAPLPGSSDSSLGVSCGIPGANFTPNANPSAWPALGQEGAGTVATE
GGSSSLQSSSLSASNLLSVNQASHQHQLHQMQSRDREPPCGEWGGAALEPGAGPKNTGVA
EGADMDSGSTGGGDGSTSSSSSTSSSLWKAQPLPAISKTGASRTESWEEGAGGSSVSAEG
GKAWGFAGQDDRGDLTGASAWGTGSGGQTPGVSQGAWGGDHMLAGEWGASSGVESVSNPG
GKDGSSSNSSSSGGSAGNPTTSSSTPSTMTRAWDNQKGVGDVGAGESSEWGGQGSRGGGG
TSSSSGGGNSRSGNQRQGYHRSHQPPNPEVALQNLLNRSDLDPRVLSNSGWGQRQVRQNV
AWDLEGGGGAAAPGGGDSTPTMSAPANAQPYSGSSGTTTTDPSSSSLHQGAALNANLNSN
SILGPPAVSHGEGWDNSTSNSSSSLHARGPPPSGVNIQNPVVSQSVGGVGSSAGGQGKPS
GGWGGTASSEGQGKSWDSEGHEWRECRTGSSSGRWGDFQTQGTPSTGASGWGDSQEEKGT
GGWKEKRRGDAGNWGTRGSSDWVENEPVSCGGVWGDGKGGGGTSGDSEVGTWSNWDEGAP
RGAWGTGGTGVGGDMGGKSHQGWGGKMHPSQMPNSQSASQKGPAQQQQQQSQPQQCQSVD
TGAMQGGWGRPPGPSAQSQSSGWTSGPIPHISSGPVDTLESSGWEEPSPQSISRKMEIDD
GTSAWGDPSSCNKTVNLWDKNNAPSGQAQSVSPQQGPPTLQQQPPGRMLTGLGNRDMNPA
HSTNKGPGISSSGWGGSGSPSSPCVDNGTAAWGKPTDAPISLGNPDDTGKASSWGDPSPN
PVKSGSKSMQEGWGEGEGSVSASRHSSWEEEDESGCAWNSAGSQGSSSSYNSGGWGAKKG
NKGSLKGAGDSWMNPMTRQFSNMGILGEDHSGRSLDLAPGPPQDKKMEGEKRGMGLNEYN
GEMRKGGRGGGAGAVFRSPGSKEVGACEPGPYYDKVSGQLFSSGGGMAQSRHQPGVPPIN
PSVRAQVPHQFLSPQVPGSVLKQMPPPSGGVGGVGGGIFPPQLSPQHIAMLGSIYPHHIQ
FQLACQLLLQQQPQQQQQQHLLQNQRKFPPNIRQQADPQQLARIMAVLQQQRQQQQHVGG
TGGSSKLSPSHLGGSGPKMPMSDTLTHPGLAGSVADLHQKTQGTYSGFGPGVSLSGLELG
PMVGGPAGLKDSGGQQSRFKWMMEGHSPAPSPPDSTLHKNGPIAAPLKMRGGSPYSQYEM
LGGESLGVPPQGPSDHWHRSPGNKMGAKTGTSSWPPEFQPGVPWKGIQSVDPESDPYMTP
GSMLGSSMSSLNDTEHQLLRDNTESNPSLNTLLPSPGAWPYSASESPLNNAHNPAKYTDY
KPSWPLEPIGHNKPWKTNRNSSYLPRPPPGLTHQKQPSISPWTGGGPRLGRSWGGSGGGQ
ENRFGPGSAWSDGGASKGSCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALI
RYSTRQEAAKAQSALHMCVLGNTTILAEFVSEEEVARYFAHSQAGAGGSGNGGSGAGGVP
DSGPAGVTGSSGAGAVGTISTGSGERERAGVGSLTAGGSNKSGGTGPSGSTWQSLEGTGS
SPDPASAQGAGLSIFAQWSSNGAGGSVGSNTGGVDPGRAGLWGGMTPGYTSSSLWGSPAM
EDRHQMSSPAALLPGDLLGGGADSI
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaggaagataaaaggaaacgggaaacctcacagaaggtt
gcagagcaaaaaaataaagtgccagaattgaccaagcctccatctgcacagtctcctgtc
acccccaactcagcttcccccagccctggccccgtcccctcttcaaccccatccactgcc
accccggctgctggcgccctccctcagggtgggaacaatgctaagcggccggtggtggcc
aacggacagccctcccccggcacacagaattctcagcgctacatgccccgtgaagtgccc
cctcgattccgttgccagcaggaccataaagtgctactgaagaggggccagccaccactg
tcctccatgctgctggggggaggcaacagcgggggcgacagccccaatgaaacagtggct
tctgcctcagaagttatgcaggtttggaacggcatagatccaagtcagggccctgtgggt
ccagctgctccctcactgccccatacgtcatcctcctcatcaatcgctgcttcttcttct
tcaaattatgcaaattccatgtgggggaccagctctggcagccaacccccctctcagggc
agggaaaaggtgatagtggaccggtcagacctggaggaatggcctagtattgctgctgga
gatgggtcaaaggttgtggatacagcaggtaccggaggtgcggacagtagcggaattctg
aaccgcagcgcctcatggggtgagaggcatctccagcagcaagcaaaagttgtgggagga
ggaaatgggaggaaaggagtgaattccagcagcccctccccacccacatcctctggttca
ccaaatgaatgtatgcagtctggtagtgtttgggcttcatcctcccatgaactcatagtg
gggaatgcagtagcagcatgctcattgccccccatatccaaagctgcccctctcccaggg
agctctgatagctccctcggtgtcagctgtgggattccaggtgccaatttcacccctaat
gccaatccctctgcttggccagccctaggacaggaaggagctgggacagttgcaacagag
ggtggctcctcttctctccaaagctcatctttgtctgccagcaaccttctttctgtgaat
caagcctctcatcagcaccaacttcaccaaatgcaatccagagacagagagccgccctgt
ggagagtggggtggtgcagcactggaaccaggagcaggaccaaaaaacacaggggtggca
gagggggctgatatggactctggaagcacaggtggaggggatggctccacttcctcttcc
tcctccaccagctcatcattgtggaaagctcagcctttgcctgcaatctccaaaacgggt
gcctcaaggactgaatcttgggaggaaggggcaggagggagctctgtgtctgctgaaggc
gggaaagcctggggttttgcgggtcaggatgatcgaggagatttgacaggggcaagtgcg
tggggaacaggaagtgggggtcagacccccggggtatctcagggagcgtggggtggggac
catatgttggctggggagtggggggcgtccagtggtgttgagagtgtcagcaatccaggt
gggaaagatggttcgagcagtaacagcagcagcagcggcggtagtgccggtaacccgacg
acttcctcctccacaccttcaactatgacaagagcttgggacaatcagaaaggagttggg
gatgtgggagcaggagaatcgagtgagtggggaggccagggtagcagaggtgggggaggt
acctcatcctccagtggcggagggaactccagaagtggcaatcagcgccaaggctaccac
cgctctcatcaacctcccaaccctgaagtggccttacagaatctgcttaaccggtctgac
ctggatcccagagtgctgtccaactctggttggggtcagaggcaagtccgtcagaatgtg
gcatgggatttggagggaggtggcggagcagcagcaccaggtggaggagactccacacct
acaatgagtgcacctgccaacgctcaaccatactctggttcttctggcaccacaactact
gatccatcttcctcctctctgcaccaaggtgcagctctgaatgccaacttgaactcaaac
tccatcctcgggccacccgctgtttcacatggtgaaggttgggataacagtactagcaac
agcagttcttctttgcatgcccgaggccctccaccctccggtgtcaatatccaaaaccct
gtcgtctcacaatctgtaggtggagtaggtagttcagccgggggacaaggcaagccatct
gggggttggggaggaactgcttcatcagaaggccaagggaaaagttgggacagcgaggga
catgagtggcgagaatgtagaacagggagctcgtcaggcaggtggggagatttccaaaca
cagggtactccatcaactggagcaagtggctggggagacagtcaggaggagaaaggaaca
ggtggttggaaagaaaagagacggggggatgcaggcaattggggaacgagaggtagcagt
gactgggtagagaatgagcctgtgtcatgcggaggggtttggggggatgggaagggtggt
ggaggtactagtggggactcagaagtgggtacatggagtaattgggatgagggagctcct
agaggggcatggggaactggaggtacaggggtgggtggagacatgggtggcaaatctcac
caaggctggggtgggaagatgcacccgtcacagatgccaaacagccagtcggcctcacag
aaaggcccggcacagcagcagcaacaacaatcacagcctcaacagtgtcagtccgtggac
acaggggccatgcaagggggctggggaagaccaccaggtccttcagcccagagccaaagt
tcagggtggacttcagggcccataccccatatttccagtggccctgtagacactttagag
tccagcggttgggaggagccttctcctcagtccatcagcaggaaaatggagattgatgat
ggaacatctgcttggggtgaccccagcagctgcaacaaaactgtcaacttgtgggataag
aacaatgccccatctggccaggcacaatcagtgtcccctcagcaaggacccccaacccta
cagcagcagccacctggaagaatgctaacaggcctcgggaatagggacatgaaccctgca
cattcaacaaacaaggggccaggaatatcttcttctggatggggaggcagtggctctcct
tccagtccatgtgtggacaatggtactgcagcctggggtaaacctactgatgcacccatt
agtttgggcaaccctgatgacactggcaaggcatcaagctggggggacccctctcccaat
ccagtgaagtctggttcaaagtctatgcaagaaggttggggtgaaggagagggctcagtt
agtgcttcacgtcactccagctgggaggaggaggatgagagtggttgtgcatggaacagc
gctggttcccaaggcagtagctcatcctacaactctggaggctggggagccaagaagggc
aacaagggttccttgaagggtgcaggggactcttggatgaacccaatgacaagacagttt
tcaaacatgggaattctgggagaggaccacagtggtcgttctttggatctggcccctggt
cctccgcaggacaaaaagatggaaggagagaagcgtggcatgggcttaaatgagtacaat
ggagagatgcgtaaaggaggacgcggagggggagcaggagcagtcttccgttcacctggt
tccaaagaagtgggggcatgtgaacctgggccttactatgacaaggtgagtggtcagttg
tttagtagcggaggtgggatggcacagtccaggcaccaaccaggggtgcctcccatcaac
ccatcagtacgagcgcaagtgcctcatcagttcctgtcaccgcaggtgccaggctctgtg
ctgaagcagatgcctcctcccagtggaggtgttggaggtgttgggggaggcatctttcct
ccacagctttccccacagcacattgccatgctcggcagcatatacccccatcatattcag
ttccaactggcctgtcagctgctacttcaacagcaaccacagcagcaacaacagcagcac
ctgctgcagaaccagcgcaagttccccccaaacatacgtcaacaagcagacccacaacaa
cttgctagaatcatggctgttcttcagcagcagagacagcagcagcagcatgtgggaggt
acaggaggcagctccaaactctctccttctcaccttggtggtagtggcccaaagatgcca
atgtcagacaccctcacacaccctggcttggcaggatctgtagcagacctgcatcagaaa
acacaaggaacttattctgggtttgggcctggagtgagcctctctggtctggaattgggt
cccatggttggtggcccagctgggcttaaagacagtggggggcagcagtctcgtttcaag
tggatgatggaaggtcattccccagccccctcacctcctgatagcactctccataaaaat
ggtccaattgctgctcccctcaaaatgagaggcggttctccatactcccagtatgagatg
cttggaggtgagagtttgggtgtgcctccacaagggccgtcagatcactggcacagaagt
cctggaaacaagatgggcgccaagactggcacatccagctggcctccagagttccaacca
ggagtgccttggaaaggaattcagagcgtggaccctgaatctgatccttacatgaccccc
ggaagtatgctgggctcatcgatgtcaagcctcaatgacactgagcaccagttgctaaga
gacaatacagaatcaaatccctccctcaacaccttgctgccttcacctggtgcctggccc
tacagtgcctcagaaagccccctcaacaatgcacacaacccagctaagtacacagactac
aagcccagctggccacttgagccaatagggcacaacaaaccttggaagaccaatcgcaac
agctcttatctgccacgcccacctccaggactgacccatcagaaacagccctctatttct
ccttggacgggaggaggcccacgattgggtagaagctggggtggctctggaggcggccaa
gaaaaccgatttgggcctggttctgcatggagtgatggaggagcctctaaggggagctgc
tggctggtgttgagtaatcttacccctcagattgatggctccactttgaggactatctgc
atgcagcacggtccgcttttgacctttcacctcggtttgactcaaggtagtgctctgatt
cgctacagtactcgccaagaagcagccaaagcccagagcgcacttcacatgtgtgtttta
ggtaacaccacaatccttgccgagttcgtgagcgaggaggaggttgctcggtattttgca
cattcccaggctggagctggcggaagtggcaatggaggcagcggagccggtggtgtgcct
gactccgggccggcaggcgtgacggggtcatcaggggccggggccgttggtaccatcagc
actgggagtggcgagcgagaacgggctggagtgggaagtttgacggctggaggaagcaac
aaaagtggcggaaccgggccctctggctctacctggcagagtttggaaggtacgggcagc
tcccctgacccagcctctgcccagggagcaggcctaagtattttcgcccagtggagcagc
aatggtgctggtggcagcgtgggcagcaacacagggggcgttgatcctggcagggcgggg
ttgtggggcggcatgactccagggtacacaagcagcagtctgtgggggtctccggctatg
gaagatcggcaccagatgagcagccctgcagcgctgttgcctggagacctgctgggagga
ggtgcagactctatctga
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