Cyprinus carpio (common carp): 109053315
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Entry
109053315 CDS
T05134
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109053315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109053315
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109053315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
109053315
NCBI-ProteinID:
XP_042613031
Ensembl:
ENSCCRG00000007749
UniProt:
A0A8C1TC48
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All DBs
Position
A1:complement(20183235..20194209)
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AA seq
950 aa
AA seq
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MLKSKTFVKKTRSGGVLKIVREHYLRDDIWCGSEVCKECKDEAPVLQEHACIESDLCSYP
HYLIPDTNVLLHQIDILVDPLIRNVIILQTVLQEVRHRSAPVYKRIKDAIHEKEKHFYTF
TNEHHRETFIEREQGESANDRNDRAIRVAAKWYTDHLAKKTNGGSLKVVLLTDDRANKEK
AEQDGLIVYRCEEYIKSLIGNPELMDRLALQPDDQNEITGSKLLFPEHLPLSRIQSGIKN
GMYLQGTFHANRDNYLEGKVFINREGEEINEVLLQGLQNLNRAVHQDVVAVELFPKERWV
APSSVVLQDDSPNDEDADEDETENNLKGVPSDSSVLKPTGRVVGVIKRNWRPFCGMLSQS
MIKEATRHLFTPADRRIPRIRIETRQAANLVGQRIMVAIDGWPKNSRYPNGHFVKNLGSA
GDKETETEVLLLEHDVPHQPFSQAVLSFLPQMPWSITEEDLKVRADLRHLCVCSVDPPGC
TDIDDTLHCRELENGNLEVGVHIADVSHFIRPGNALDQEAASRGTTVYLCGKRIDMVPEL
LSSNLCSLRSNVERLAFSCIWEMNHNAEIIKAHFTKSIINSKASLTYAEAQMRIDDSNMN
DDITKSLRGLNRLAKILKSRRIAKGALTLSSPEVRFHIDSETHDPIDMQSKELKETNSMV
EEFMLLANISVAQKIYDEFSECALLRKHPSPPPSNYDILIKAAKSRDLNILTDSAKALAD
SLNNATVENFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYA
DIIVHRLLAVAINADSTYPDLMDKHKQTALCNNLNYRHKMAQYAQRASVAFHTQLFFKNK
GIINEEGFILFVRKNAIIILIPKFGLEGAVFFDHKDKPSPRLSFDSEGPTLKVEEHTFRM
FDKVKVTISLDASNIQHQRIRMALVEPVIPGVSVPVPESEPEAKKPKLDC
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatccaaaacatttgtgaagaagacccgctctggaggagtgctgaagatagtg
cgcgaacattacctgagagatgacatctggtgtggaagtgaagtgtgtaaggagtgtaaa
gacgaagcgcctgtgctgcaagagcacgcgtgcatagagagcgacctgtgctcatatccg
cactatttaatcccagacaccaacgtgcttttacaccagatcgacatcctcgtggaccct
ctgatcaggaacgtcatcattcttcagactgttttacaagaggtcagacaccggagtgcc
ccagtctacaaaagaatcaaggatgccattcatgagaaggaaaagcacttctacaccttc
actaatgagcatcacagggagacattcattgaacgagagcaaggggaaagcgctaatgat
cgtaatgatcgagccatccgtgtcgctgctaaatggtacaccgatcacctcgctaaaaag
accaatggtggttctctgaaagtggttctgctgaccgatgatcgagctaataaagagaag
gcggagcaggatggtctgattgtgtacagatgtgaagagtatatcaagagcttgattggc
aaccctgagctcatggacagacttgcattgcaacctgatgatcaaaatgaaatcactggc
agtaagttactgtttccagagcatctgcccttatccaggattcagagtggcataaagaac
ggaatgtaccttcagggcacgttccatgccaacagagacaactatctggagggcaaggtc
ttcataaatagagagggggaggaaatcaatgaggttctacttcaaggccttcagaattta
aaccgggctgttcatcaggatgtagtggctgttgaattatttcccaaagaacgctgggtt
gctccatcatctgttgtgctgcaggatgatagtccaaatgatgaagatgctgacgaagat
gagactgaaaataatctgaagggtgtaccatcagactctagtgttctcaagcccactgga
cgagtggtgggtgttataaagaggaactggagacctttctgtgggatgctctcacagtca
atgatcaaagaggcaacaaggcacctcttcaccccagcagaccgacgaatcccacggatt
cgtattgagaccagacaagccgccaatctggtcggacagaggattatggttgctatcgat
ggctggcctaaaaactccagatacccaaatggtcactttgtgaaaaaccttggctctgct
ggagataaagagactgagacagaggtgctgcttctagaacatgatgttcctcaccagccc
ttctctcaggctgttcttagcttcctaccccagatgccctggagtattactgaggaggat
ttgaaggtcagagcagatcttagacacctctgcgtgtgtagtgtggatcctcctggctgt
acggatattgatgatactcttcactgtcgggaactggagaatggaaacctggaggttggt
gttcacattgcagatgtcagccattttattcggccaggaaatgctttggatcaagaggca
gcaagcagaggcactacagtctatctttgtggaaagagaattgacatggttcctgaactt
ctgagttccaacttgtgttctctgcggtccaacgtcgagaggttagcattctcttgtatt
tgggagatgaaccacaatgctgaaatcatcaaagctcacttcacaaagagcatcattaat
tccaaggcctcccttacatacgccgaagctcagatgaggattgatgacagcaacatgaat
gatgacatcacgaagagcctgcgaggccttaacagactggccaagatcttaaagagccgg
aggattgcaaaaggagcgctgaccctctcctctcctgaagtacgtttccatatcgacagc
gagacacacgaccctatagatatgcagtccaaagaactcaaggagactaattctatggtg
gaggagttcatgttgttggcgaatatctctgtagcacagaagatctacgatgagttctca
gaatgtgccctgctgaggaaacacccttcaccaccaccatcaaactacgacatcctcatt
aaggctgcaaaatcaagggacctcaacatcctcacagattcagccaaagctctggctgat
tccctgaacaatgcgacagtagagaactttccgtacttcaacaccctgctgaggattctg
gccacccgctgcatgatgcaggcagtgtatttctgctctggcatggacagtgatttccac
cattatggcctggcatcacccatttacacacacttcacatcccccatcagaagatatgct
gatatcatagttcaccgtttgttagcagtggctattaacgcagacagtacgtacccagat
ttgatggacaaacataagcagacagccttgtgcaacaacctcaactacagacacaaaatg
gcccagtatgcacagagagcctcagtggcgtttcacactcagctattcttcaagaataag
ggaatcataaacgaggaaggcttcattctttttgtaagaaaaaatgccatcatcatcctc
atccctaaatttggattggagggcgccgtgttctttgaccataaggacaaacccagtcct
cgtctcagctttgactctgagggtcctacactcaaagtggaggagcacactttccgcatg
tttgacaaagttaaagtaacaatcagccttgacgcttccaacatacagcatcaaaggatc
agaatggcgctcgttgaaccagtgatccctggggttagtgtacctgtgcccgagtccgaa
ccagaggccaaaaaacccaagcttgactgctga
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