Cyprinus carpio (common carp): 109053645
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Entry
109053645 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23-like
KO
K16507
protocadherin-16/23
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccar04515
]
109053645
Cell adhesion molecules [BR:
ccar04515
]
Cadherins
Cadherin related
109053645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_4
RET_CLD1
RIFIN
CADH_Y-type_LIR
Motile_Sperm
DUF5640
DNA_ligase_A_M
Motif
Other DBs
NCBI-GeneID:
109053645
NCBI-ProteinID:
XP_042572203
UniProt:
A0A9Q9VVZ4
LinkDB
All DBs
Position
B1:complement(3555002..3594818)
Genome browser
AA seq
3272 aa
AA seq
DB search
MQRTYTNYFHMKMEIYVQTLLQFLLLTLFCEDGCAQVFNLSLSIEEGLPAKTIVGDIRAG
LPAKSQSSGFFISESRDSDVFRDFEIDGDTGIISTAVVLDRERTNKYEFAAATLKGEVIK
VIIEVKDVNDHSPAFPVKTIQLNVSELSPPGACFELEGAQDQDEGDYGIQGYRITDGDMR
KLFKVEIRNSGGGIFSFDLILQARLDREMTSFYSFTIEAFDGGLPPKTGQLQVHITVLDE
NDNQPVFNQTEYHAVVLEKTPIMTPVCQVFATDPDLGSNGWVTYKINRRQSDPNEFFVID
SSSGIISVNKLLDYENQSFFELVVTAWDSGIQPESSSTFVSIKVLDVNDNHPNISILFLN
EAGAPEVSEGARPGDYVARIAVSDPDLGDVKKIDVHLQGGDGMFSLKSTDDFLYVLCVDG
PLDREVKDVYELTVTARDFGSPPLSSKTTFQVQVTDVNDNPPVFDQNIYEESIPEDVHEG
TALFRVKATDRDLGGDSGIIYSIMQPEQEQLLNINATSGLITTAAGLDHERETELRFLVV
ATDGGSPSLSSTATLTIHVVDVNDNKPIFKQQFYNVTVKEHTTVGTCILQVTAIDADDAE
FGSVQYSLYDGFSSKDDHPYFHINSVTGEICVSQDIDHEAGLVTFDLSIKAEDKDGLSSQ
TFVHISVEDVNDNAPVFSPEKYVTSVSIHAQPGTELLCIFASDRDSGNNGKITYELLPGD
SASLFTVDQSTGSVFLNASLSQLRSSSVKLSVSAQDGGGTSAVYPANITMNILQSDQPPA
LFQKAHYTFSISEDAPVGSSVGLVQAVTPANSVELVSFIISSGDPQRLFSIDSQSGIITT
GQPLDHESLSYVILNIQFHMGTLPIYSSAQVNISITDVNDNPPVFQKTSEHITISHNTPP
GTPIFIPHAHDADSGLNGRIHYMLRPESHLFSIHPRIGTLMLNGDLSGDSSQRYELNVIA
EDEGYPSLSSTLRLAIEMDFLGSVEDTLAFETLVYQVEIGESAPKDTRMIQVRAHGARSQ
HGGTPGKAPPIITYSLKALSGVPPFRIHPETGWMFVSQSLDYETEPIYRFSVCAKAQNGK
TEATATVVVTVQDENDNAPVFSRDVYFFSLQEGPSPHGMIGTVKATDRDTRNNGALSYIL
LSEGKYFRINPRTGEIINMVALDREEQAQHVLRVMATDQGRPRLNTTTTVHILVTDVNDN
PPQFTHLPPTKELNVQVWAGIGVNSVVITMFAKDLDAGENGTVKFTMKDNRLGHFSIDNR
NGDVRVTSRFSSNPQKRYTLRVVATDNGLFPLEENAVVHIQVYALDQQNGNPKDFQSLEY
LTVREDVKLGTVVGSLGISNAPDMQLRYSIVEGDGSLQFGIKSSSGELYVAQHLDYEVTQ
RYFLVVRAEAPPTFNVTAFVAISVVDVNDHTPWFPGNDNFVVFGVFEDVTNGTVVYVFNA
HDGDGSLRNSELYYSLTYDPDPAIKGLPLHIDPHTGVVKTNGRLDREHTENIVFRVTVSD
NAEEPNDRKHTSVIAQAILLDINDNSPTFVSTEMASVPEDTEVGLLVHHVMAKDEDEGSN
GHVIYSVISGNEMGYFHMESTGHLYLNSSLDYESQNVHILTIQAKDSGIPSLSSTQMLTV
KILDVNDKPPVFQQHIYNTTVMENREPGEIIITVTVVDLDSEANSAVSYSLLPGPGYELF
TINSHTGQISTSTWLDREIQSSFTLRVQAEDSGTPSLSSTATVLCSXLDDNDNTPEFSQP
DLHIVIPENLPPGVIHILQASDIDNGLNGTIQYFIEEDKECFSIDAVTGAISTTRMLDRE
ERSNYSLVITAADHGHPPLSSTALLHISLSDENDNSPSFTRKSYHSSISEGLPAGSEILH
LIAWDPDEGPNGVVTFSLAEENSGNFYVDGSTGVIRLTKPLDRETRSQHVFRAVASDGCS
QGPRSSVATVTIQVEDINDNPPACINKSMQVSVSSITTRPSQPIITVAAQDPDQGDNGTV
VFSLADEDEMFWVDESGAVRLKAPLSNEVYGTKLLQIQAADLGRPSLTSSCLVLIQLNGE
EPPLQFTEELYEVTMPENSKTGSWVANVVAHDQTADEGTIKYSIFSGNENEAFTINPITG
DITVREQGLMDFEVQHKIHLVVLAENGHQTSYARVAITLQDVNDNAPVFKQSYYRTAVWE
GQIHNTYVMQVLATDSDSGVNGQISYFIVDGNHNNAFVIDSVRGILATSAVLDREIVSSY
KLILQAEDMGSPPLTGTCTVRVQIVDVNDNSPTIPSMEPVTIAENLPVGYIVTQVTANDV
DLSPSATYRFIEKDQTSRSFAIDQYSGVITTTKSLDYEDQAVYTLRVEASDSVHQTEAEI
SIKVLDVNDNPPVFSQESYQVVLPERTSANSYVVSVSATDKDSGQNGRISYRLLSSPARG
FYIDPENGSVFTNKPLSYVANGNMLRLLVEARDSGDPNLFSVTSVDIEVVDFNDNAPFFT
QNSYEVSVPEDVSVGCTLLTLFAEDKDYSNKNTHLEYAIVGGNDERRFSLEVVSIPGKAQ
SQTVGQIVLCDTLNREATDTYLLTVTVTDRGTPPLNSSTVVSVKVLDINDNAPVFSSPEY
HAQVTENSPLGTALIYVSAYDPDLGANGTITYNIISGNNRGLIRVDPATGVLEVNGTLDY
EEDSKFTLTVQASDGNPSDKKISFAVVYILVLDENDHSPFFMFPTHNCSVPENLPAFTHV
CTVHAVDEDAGTFGVLTYSILTPCFVDYDSSNPEKKESFGVDPLTGDIHTKQTFDFEGES
EFCFVVEARDKGDQVATLRVRIEIEGIDEFSPIFTQNVYHFSLPTNVRVGQSIGQLMAMD
HDGGLDGLVEYSLVNPSPLFSVNKTTGYLYISNSVYQKRSPISNETTVDLTVLASSPKLD
SKTSICHVVVNISSSAKALTSVDLSVHTASLTVSLIVFLLLLISFIYIVLRYRFKEKSVK
KATYLSANLNHESDSLGTTRENLHSSISGIDLQELQEPVDMWGRMDIPNPSRNSNSKTSS
GRGSTEEETTEDQEIKMINKFACFKQLSSVTTQLSDSGIPGDSDQLSFHSVYEDPSSSAN
IGIVQIVDMPSSESLHNFKDEGGGEGMLPQVVNMKEVEEVMRRCMSMSDDQGSVEGSLTN
LISSEEQLHGSYSWDYFLNWQPRFQSLASVFTDIGMLPNEGMRARDVEPESQSLLRPPPL
ITAVAQPGIRAVPPRMPYRRSPLVRMPTYTKTHTRNTELTHSAMTPSFSPSLSVLTVRTP
STSPVVSETGLGCYTKIATLPRDILDEAEIQV
NT seq
9819 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaacttatactaattattttcatatgaaaatggagatttacgtacagacttta
cttcagtttctcttattgacattattttgtgaggacggttgcgcacaggtgttcaatctc
agtctctccatagaggaaggtttacctgcaaaaactattgtcggggatataagagctgga
ctgccggcgaaaagccaaagttctggattttttatatctgagagccgagactccgatgtg
ttcagagactttgagatcgatggagacaccgggatcatctccaccgccgtggtgttggat
cgagagcgcacaaataagtacgagttcgcggccgccactttaaaaggagaggttattaaa
gtaatcatcgaggtgaaggatgtgaatgatcattctcctgcattccctgtgaaaacaata
cagttgaatgtgtctgaattgagccctccaggagcctgttttgagttggaaggagctcag
gaccaggatgagggtgattatggcatccagggctacagaataacagacggagacatgagg
aaactttttaaagtcgagatccgcaatagtggaggtggtatcttcagttttgaccttatt
ctgcaagcaagattagacagagaaatgacaagcttctacagtttcacaattgaggcattt
gatggtggtttgccacccaaaacaggccagttgcaagtacatattactgtacttgatgaa
aatgacaaccagcctgtgttcaatcaaacagagtaccatgctgttgtattggaaaagacc
ccaataatgacacctgtttgccaggtatttgcgacagacccagatcttggcagcaatggc
tgggtcacctataagatcaatcgccgtcaaagtgacccaaatgagtttttcgttattgat
agttcatcaggtatcattagtgtcaataaacttttggactatgaaaaccagtcatttttt
gagcttgttgtgacagcatgggattctgggattcagcctgaatcctccagcacatttgta
agtattaaagtcctggatgtcaatgacaaccacccaaatattagcatcctttttcttaat
gaggccggagcacctgaagtatctgagggagcgagacctggagactatgttgcaaggatt
gcagtctcagatccagatttaggagatgtcaagaagattgatgtgcacctccaaggtggg
gatgggatgttctccctcaaatccactgatgattttctttatgttctctgtgtggatggc
ccactggaccgagaggtaaaggacgtgtatgaactcactgtgacagccagagatttcggt
tctcctcctctgagcagcaaaacaacatttcaggttcaggtcacagatgtgaatgacaat
ccacctgtttttgaccaaaacatctatgaggagagcattcctgaggatgtgcatgaggga
acagctctcttccgagtcaaggccacagacagagatcttggtggagattctggaatcatc
tactctattatgcagccagagcaggagcagttgttgaatataaatgcaacatcaggtctc
attaccactgctgcaggcctagaccatgagagagagacagagctgaggttcttggtggtg
gctaccgatggtggttccccctctctgtcctctacagccaccctgaccattcatgtggta
gatgtcaatgacaataaacctatattcaaacaacagttctataacgttactgtcaaagag
cacacaactgttgggacatgcatcttacaggtcactgccatagatgctgatgatgctgag
tttggatcagtgcaatactccctctatgatggcttcagcagcaaggatgaccacccttac
tttcacatcaactctgtcactggggaaatctgtgtgtctcaagatattgatcatgaagct
ggccttgtgacctttgacctgtcaattaaagctgaagataaagatgggctcagttcacag
acatttgttcacatcagtgtggaggatgtgaatgataatgctcctgtttttagtcctgag
aaatacgtcacgagtgtgagcatccatgcccaacctggcactgagctactctgcattttt
gcttctgaccgggattctgggaacaatggaaaaattacctatgagcttctgccaggagat
tctgcctctttattcactgtggaccagtcaacaggttccgtcttcctgaacgcttcactt
tcccagctgcgcagcagcagtgtgaagctgtctgtctctgctcaggacggaggaggcacg
tctgctgtttatcctgctaacatcaccatgaacatcttgcagagtgaccagcctcctgcc
ctcttccaaaaagcccactacaccttttctatctccgaggatgcccccgtgggctcctct
gttggtttggttcaggctgttacccctgccaattcagtggagctagtctcattcatcata
tcctcaggtgaccctcagcggcttttctcaattgattcccagtcaggcatcatcaccact
ggccagccactggaccatgagtccctgtcttatgttattctgaatatacagttccacatg
ggaacccttcctatttacagcagtgctcaggtcaatatctccatcactgatgtcaatgac
aaccctcctgtgttccagaagacctcagaacacatcaccatatcccacaacacccctcca
ggcacaccaattttcattccacatgcccacgatgctgacagcggccttaatggcagaatt
cactacatgttacgtcctgaaagccacttgttttccattcacccacgtattgggactcta
atgctgaatggcgacctttcaggagattccagccagaggtacgagctcaacgtcatagct
gaggatgagggttatccttcattgagctctacgttacgtcttgcgatagagatggatttc
ttagggtctgtagaagacacactagcctttgaaactttggtttatcaagtggaaattgga
gaaagtgctccaaaagacactagaatgattcaggtacgtgctcatggagccagatcccag
catggagggacccctggcaaagcgccccctatcattacttactctcttaaagccctctct
ggagtcccaccattcagaatccacccagagactggatggatgtttgtatctcagagtctt
gactacgaaacggaacccatctacagatttagtgtgtgtgcaaaggcacaaaatggcaaa
acggaggccacagcaacggtggttgtcacagttcaggatgagaatgacaatgcacctgtg
ttcagtagggatgtgtacttcttcagtttgcaggagggaccgtctcctcatgggatgatt
ggaacagtaaaagctacagacagagatacacgtaacaatggagcattgtcctacatcttg
ctgtctgagggaaaatactttcgcatcaaccccagaacaggagaaatcataaacatggtg
gctttggatcgtgaggaacaggcacagcatgttttgagggtgatggccacagatcagggt
cgaccacgtctcaacaccaccactactgttcacatccttgtcacagacgtcaacgataac
cccccacagttcacacacctacctcccactaaagagctaaacgtacaggtgtgggcagga
attggtgtgaattcagttgtaatcactatgtttgcaaaagacctggatgctggagagaat
ggaactgtcaagttcacaatgaaagataatcggctgggccactttagtattgataaccgc
aatggtgatgtgagggtgacatcacggttctcctcaaacccacagaagcgctacaccctg
agagttgttgccacagacaatggtctttttcctctggaggagaatgcagttgttcacata
caggtttatgccttagaccaacaaaatggaaacccaaaggattttcagagcctcgaatac
ctcactgtgcgggaagatgtaaaactgggaactgttgttggatcacttgggatttctaat
gcaccagatatgcagttacgatattctattgtcgagggtgatggtagtttgcagtttggc
atcaaaagctctagtggtgagctttatgtggcccaacatctggactacgaagtcacacag
cgctacttcctggttgtacgagcagaagcccctcccacgttcaatgtcactgcatttgtg
gcgatcagtgttgttgatgtcaatgaccacaccccctggtttcctggtaatgacaacttt
gttgtgttcggtgtttttgaggatgttaccaatggaacggtggtctatgtgtttaatgca
catgatggtgatggaagtctgcgtaacagtgagctttattattctttgacctatgacccc
gaccctgccataaaggggctgcctttacacatcgaccctcacactggagttgtcaaaaca
aatggacggttggaccgtgagcacaccgagaacattgtatttagagtgactgtcagtgac
aatgcagaagagcctaatgataggaaacatacatcagtcatagcacaggcgattctgttg
gatatcaacgacaatagtcccacatttgtctccactgaaatggcttctgtcccagaggac
actgaggtgggacttttggttcatcatgtgatggccaaagatgaagacgaagggagtaac
gggcatgtcatttacagtgtaatttcaggcaatgagatgggctactttcatatggaaagc
acagggcatctgtacctgaattcatccctggattatgaatcccagaatgtccatatcctc
actatccaggccaaagacagcggcatcccttctctgtcgtctactcagatgctcacagtg
aagattttggatgttaatgacaaacctcctgtgttccagcagcacatttacaataccacc
gtcatggagaacagagaacccggagagatcattatcacagtcactgtagttgacctggat
tcagaggcgaattctgctgttagctacagcttgttacctggtcctggatacgagctcttt
acgataaactcccacactggtcagatcagcacctcaacttggctagacagagagatccaa
tccagttttactctcagagttcaggcagaggacagtggcactccgtctctgtccagcact
gccacagtcctgtgctctnncctggatgataatgacaacactccagaattttctcagcct
gacttgcacatagttatcccagagaacttgccaccaggagtcattcacatcctccaggcc
tcagatattgataatggactaaatggaactattcagtacttcatagaagaagataaagag
tgtttcagcattgacgctgttactggagcaatcagtaccacgagaatgctggacagagag
gagcgatccaactactcactcgtcatcactgcagctgaccatgggcatccacctctgagc
tctactgcactgctgcacatcagcctctcagatgaaaatgataacagcccctcattcact
cggaaaagctatcattccagcattagcgaggggctccctgcaggttcagagatcctacat
ctgatagcatgggatcccgacgaggggcccaatggtgtagtgacgttctccttggcggag
gaaaattctggaaacttttatgttgatggctctactggtgtgataaggctcacaaagcca
ttggaccgtgaaactcgttcccagcatgttttccgtgctgtagcttcagacggctgcagc
cagggtccacgcagctcagtcgctacagttacaatacaagtggaagatattaatgacaat
ccaccggcatgcattaacaagtccatgcaggtgtcagtgtcttccataaccacacgtccc
agtcaacccatcataacggttgcagcccaggatccagaccaaggagacaatgggacagta
gtttttagtttagcagatgaagatgagatgttttgggttgatgagtctggagctgtgagg
ttgaaagcccccctgagtaatgaggtgtatgggacaaagctgctccaaatacaggctgcg
gatctaggtagaccttccctcacctctagctgccttgtgctcattcagcttaacggtgaa
gagccaccattacagtttactgaagaactctatgaagtcacgatgccagagaacagcaag
acaggttcttgggtggcaaatgttgtagctcatgaccagacagcagatgaaggaacgatc
aagtacagtatttttagtggcaatgaaaatgaagccttcacgattaacccaattacaggt
gacatcacagttagggagcagggactgatggactttgaggtacagcataaaattcaccta
gtggttttggctgaaaatggacaccaaacatcctatgccagggtggctatcactctacag
gacgtcaatgacaatgctccagtgttcaagcaaagctactatagaacagctgtatgggag
ggacaaattcataacacctatgtcatgcaggtgttagcgacagattctgacagtggtgta
aatgggcagatcagctacttcattgtggatgggaaccacaataatgcatttgtgatcgat
tctgttcgtgggattcttgccaccagtgctgtcttggacagagaaattgtctcatcctac
aagttaattcttcaggctgaggacatggggagtcctccccttacaggcacctgcactgtt
cgtgtccagattgtagatgtgaatgacaatagtcctacgattccatccatggaaccagtg
accattgcagaaaatcttcctgttggctacattgtcacacaagtgactgcgaatgatgta
gaccttagcccttctgcaacatacagattcatagagaaggatcagaccagcagaagtttt
gcaattgaccagtactcaggagtaattaccacaactaaaagtctggactatgaagatcaa
gctgtctatacattgagagtggaagcatcagactctgtccatcaaacggaggctgaaatc
tcgatcaaggtgttggatgtcaatgataaccctccagtcttctctcaggagtcataccag
gttgtgttgccggagcggacatcagcaaactcatatgttgtgtctgtatcagcaactgat
aaagactctggccaaaatggaagaatttcttacaggcttctttcctccccagcgagagga
ttctacattgatcctgaaaatggttcagtgtttaccaacaagcctctgagctatgttgca
aatggaaacatgttacggttactggtggaggcacgtgacagtggtgacccaaacctattt
agtgtcacttctgtggacatagaggtggtggactttaatgataatgccccattttttacg
cagaactcatacgaggtgagtgttcctgaggatgtatctgttggatgcactctcctcact
ctcttcgcagaggacaaggactactcaaataaaaacacccatttggagtatgcaatcgta
ggtggaaatgatgagaggcggttcagccttgaagttgttagcattccagggaaagcccaa
agccaaactgttggccaaatagtgctctgtgatactctgaaccgagaggccacagacact
tacttattgactgtgactgtaacagacaggggaacccctccccttaacagctcgactgtg
gtatcagtcaaagtccttgatattaatgacaatgcacctgttttcagtagtccagaatac
catgcacaggtcactgagaacagccccttaggtacagcccttatctatgtctctgcctat
gatcctgatctaggcgcaaatgggaccataacgtacaacatcatctcaggtaacaacaga
ggcctgatcagagtggaccctgcaacaggtgttcttgaagttaatggtacactggactat
gaagaggacagcaaatttacactaacagtccaagcatcagatggtaacccaagtgacaaa
aagatatcttttgccgttgtttacatattggtgctggatgagaatgaccattccccattc
ttcatgttccccacccacaactgctctgtgcctgaaaacctgccagcttttacccatgtg
tgcacagtacatgctgttgatgaagacgcaggaaccttcggagtacttacttattccatt
ttaaccccctgtttcgtggattatgacagtagcaacccagagaagaaagaatcctttggt
gttgatcctcttactggagacatccatacaaaacagacgtttgactttgaaggagagagt
gaattctgctttgtggtagaggcacgtgacaaaggagatcaagtggcaaccttgagagta
cgaatcgaaattgaaggcattgatgagttcagccccatcttcacacagaatgtgtaccat
ttctctctgccgaccaatgtcagggttggccaaagtataggccagctgatggctatggat
catgatggtggtctggatggtttggtggaatactctttagtcaacccatccccattattc
agtgtcaacaaaacaactggctacctatatatctcaaactctgtgtatcagaaaagaagc
cccatctcaaatgagacaacagtggacctgactgttctagcaagcagccccaaactagac
tccaagacgtcaatctgccatgtagttgtgaacatatccagttcagcaaaggctctgaca
agtgttgatctcagtgtccacactgccagtctcactgtgtcattgatagtgttcctccta
cttttaataagctttatttacattgttctaaggtacaggttcaaagagaaatccgtaaag
aaagcaacttacttatctgctaacctcaaccatgagtctgactctttaggaacaacacgt
gagaaccttcacagcagtatcagtggtattgacctccaagaattacaagaaccagtagac
atgtggggaagaatggatatcccaaacccttcaagaaactcaaactcgaaaacctcgagt
ggaagaggatctactgaggaagagactactgaagatcaagagatcaaaatgatcaacaag
tttgcatgttttaaacaactcagctctgtcacaacacaactctcagactcagggatccct
ggggactcagaccaactctccttccattcggtatatgaagacccatcttccagtgccaat
ataggtatagtccaaatagtggacatgcccagttctgaaagtctccataatttcaaggat
gaaggagggggtgagggaatgctccctcaggtggtcaacatgaaggaagtggaggaagtc
atgagaaggtgcatgtctatgtctgatgaccaaggttcagttgagggctcactcaccaat
ctgatttcctctgaagaacagctacatggaagctacagttgggactactttctcaactgg
cagccacgcttccaatctttggcctctgtttttacagacattgggatgcttccaaatgaa
ggaatgagggccagagatgtggagccagagtctcagagccttctacgcccacctcctctc
atcacagcagttgcccagccaggaatacgtgctgtccctcccagaatgccctatagaaga
tcaccactggtcagaatgcccacatacaccaagacacacactagaaacacagagttgacc
cactcagcaatgactcctagtttctccccctcactgtcagtacttaccgttaggacacct
agtacctctccagtggtctcagagacaggtttgggatgctacacaaaaattgcaacactg
ccaagagacatcttggatgaagcagagattcaagtgtaa
DBGET
integrated database retrieval system
