Cyprinus carpio (common carp): 109053779
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Entry
109053779 CDS
T05134
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109053779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109053779
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109053779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
AAA_16
Motif
Other DBs
NCBI-GeneID:
109053779
NCBI-ProteinID:
XP_042606229
Ensembl:
ENSCCRG00000020307
UniProt:
A0A9Q9XQN5
LinkDB
All DBs
Position
B23:complement(19024760..19047692)
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AA seq
683 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEETPTSPTIAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHAPPARTNPQPEPITTAAPQKAKAREASESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVVPSVRRGPSPEVTAAPTTETPSKPSAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
ISKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTRSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKSFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIEVPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtacgggcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atctactcgcgtcaagactccaggcaggctcgacacgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagacgccaacatctcccaccattgccggcacactagaccca
ctacaacaaggtcggttgtattcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagccctgaagtatgactgtgaccctcaaagagcc
cttgattttattctaactgaggagaacaccaatacacacgcccctccagccagaaccaac
ccacagcccgagcctatcaccacagctgctccacagaaagctaaagcacgggaggcttca
gagagtcgtgttgaagcagaggttgtcccgaaggttgcccgcatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggagttgttgtcccatca
gttcgcagaggcccgagtccagaggtcactgctgcaccaaccaccgagaccccatccaaa
ccatcggctgtgaatgaagactctgccgccccgaccccgactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgctactc
aacctggtggtcataggtcatgtagatgctggtaaaagcactctcatgggtcatctgtta
tatctgctggggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttacgcgtgggtactggacgagacaggagaggagagagac
agaggagtgaccatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccgggacacaaagacttcattccgaatatgattacaggggctgcacag
gcagatgttgctgtgttagtcgtagatgccagtcgtggggagtttgaggccgggttcgaa
gcgggggggcagacccgtgagcatgggctgctggttcgatccctcggagtcacgcagctt
gccgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
atctcgaagcttggtcactttctgaagcaggctggttttaaggattccgatgtgttttac
atccctaccagtggcctctcaggagaaaatctgactactaggagtaaagttgcagatctt
acagcctggtacactggaccatgcctactggaacagatagatgcgtttaaaccaccccag
cgttcagtggagaagtccttcaggctttgtgtctcagacgtcttcaaagatcagggctct
gggttctgtgtgacggggaagatcgaggctggcttcattcagacaggtgataaagttctg
gccatgcctcctaatgagacctgcacggttaaagggatcactctccatgatgaagcttta
gactgggcagctgctggtgatcatgtcagtctaactgtaactggcatggacatcattaaa
ataaatgttggatgtatattctgtgatcccaaagagcccatcagagcctgtacaagattc
cgagcaagaattctcctctttaatatagaagttcctgtcacacaaggcttccccgtactg
ttacattatcagaccgtaagcgaaccggccactattaggaagttagtcagtgtattacac
aaaagtagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaatgct
gtggtggagattcaaacacagaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatatgtgggctcgaccattgctgctggagttgtcactgag
atcaaagagtga
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