KEGG   Cyprinus carpio (common carp): 109053779
Entry
109053779         CDS       T05134                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109053779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109053779
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     109053779
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 HBS1_N GTP_EFTU_D2 MMR_HSR1 AAA_22 DO-GTPase2 GTP_EFTU_D4 AAA_16
Other DBs
NCBI-GeneID: 109053779
NCBI-ProteinID: XP_042606229
Ensembl: ENSCCRG00000020307
UniProt: A0A9Q9XQN5
LinkDB
Position
B23:complement(19024760..19047692)
AA seq 683 aa
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEETPTSPTIAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHAPPARTNPQPEPITTAAPQKAKAREASESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVVPSVRRGPSPEVTAAPTTETPSKPSAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
ISKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTRSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKSFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIEVPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtacgggcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atctactcgcgtcaagactccaggcaggctcgacacgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagacgccaacatctcccaccattgccggcacactagaccca
ctacaacaaggtcggttgtattcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagccctgaagtatgactgtgaccctcaaagagcc
cttgattttattctaactgaggagaacaccaatacacacgcccctccagccagaaccaac
ccacagcccgagcctatcaccacagctgctccacagaaagctaaagcacgggaggcttca
gagagtcgtgttgaagcagaggttgtcccgaaggttgcccgcatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggagttgttgtcccatca
gttcgcagaggcccgagtccagaggtcactgctgcaccaaccaccgagaccccatccaaa
ccatcggctgtgaatgaagactctgccgccccgaccccgactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgctactc
aacctggtggtcataggtcatgtagatgctggtaaaagcactctcatgggtcatctgtta
tatctgctggggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttacgcgtgggtactggacgagacaggagaggagagagac
agaggagtgaccatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccgggacacaaagacttcattccgaatatgattacaggggctgcacag
gcagatgttgctgtgttagtcgtagatgccagtcgtggggagtttgaggccgggttcgaa
gcgggggggcagacccgtgagcatgggctgctggttcgatccctcggagtcacgcagctt
gccgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
atctcgaagcttggtcactttctgaagcaggctggttttaaggattccgatgtgttttac
atccctaccagtggcctctcaggagaaaatctgactactaggagtaaagttgcagatctt
acagcctggtacactggaccatgcctactggaacagatagatgcgtttaaaccaccccag
cgttcagtggagaagtccttcaggctttgtgtctcagacgtcttcaaagatcagggctct
gggttctgtgtgacggggaagatcgaggctggcttcattcagacaggtgataaagttctg
gccatgcctcctaatgagacctgcacggttaaagggatcactctccatgatgaagcttta
gactgggcagctgctggtgatcatgtcagtctaactgtaactggcatggacatcattaaa
ataaatgttggatgtatattctgtgatcccaaagagcccatcagagcctgtacaagattc
cgagcaagaattctcctctttaatatagaagttcctgtcacacaaggcttccccgtactg
ttacattatcagaccgtaagcgaaccggccactattaggaagttagtcagtgtattacac
aaaagtagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaatgct
gtggtggagattcaaacacagaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatatgtgggctcgaccattgctgctggagttgtcactgag
atcaaagagtga

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