Cyprinus carpio (common carp): 109053879
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Entry
109053879 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
ccar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109053879
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109053879
09142 Cell motility
04820 Cytoskeleton in muscle cells
109053879
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109053879
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109053879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109053879
NCBI-ProteinID:
XP_042584098
UniProt:
A0A9Q9WIM3
LinkDB
All DBs
Position
A3:28861392..28878231
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AA seq
1448 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTGGSCTLDGQVYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTAHCSNPVIPHDECCPVCPDDEFKEPGVEGPRGPAGEKGDRGLPGPPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGYDEKSGGAMAVPGPMGPMGPRGPPGPPGS
SGPQGFTGPPGEPGEAGAPGPMGPRGAAGPPGKNGEDGESGKPGRPGERGPPGAQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEPGAPGENGTPGAMGPRGLPGERGRAGP
PGAAGARGNDGAAGAAGPPGPTGPAGPSGFPGGPGAKGEVGAQGARGAEGPQGARGEPGN
PGPAGAAGPAGNNGADGAPGLKGAPGAPGIAGAPGFPGPRGPSGPAGAAGAPGPKGNTGE
VGAPGAKGEAGAKGEAGAQGVQGPPGPSGEEGKRGPRGEPGSAGARGPPGERGAPGARGF
PGADGSAGPKGATGERGGPGIVGPXGATGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGA
TGTPGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGALGATGAPGKDGD
VGAPGAPGPAGPTGERGEQGPAGPPGFQGLPGPQGATGEPGKSGEQGVPGEAGAPGPAGS
RGDRGFPGERGAPGPAGPAGARGSPGSAGNDGAKGDAGAPGAPGAQGPPGLQGMPGERGA
AGLPGLKGDRGDQGAKGTDGAPGKDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPNGA
RGPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDSGPPGPAGATGAPGPQGP
VGSTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPPGPSGAPGKEGQKGNRGETGP
SGRTGEIGAAGPPGAPGEKGTPGAEGPPGSAGIPGPQGIAGQRGIVGLPGQRGERGFPGL
PGQSGEPGKQGPSGPSGERGPPGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAAGPKGD
RGETGAAGTPGAPGPPGAPGPIGPAGKTGDRGESGPAGPAGAAGPAGPRGPAGPAGARGD
RGETGEAGERGMKGHRGFTGMQGPPGPPGPSGEPGPAGASGPAGPRGPGGSSGAAGKDGM
SGLPGPIGPPGPRGRNGEIGPAGPPGPPGLPGPPGPSGGGFDIGFIAQPVEKAPDPFRSY
RADDANVMRDRDLEVDTTLKSLSQQIESIISPDGTKKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCNQDAIKVYCNMETGETCVYPAESSIPKKNWYTSKNIKEKKHVWFGEAMTDGFQF
EYGSEGSKAEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDQASGNLKKALLLQGSNEI
EIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFGI
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttggcgctgttgctcagcgcaacggtgcttttggca
agaggacaaggcgaggatgatcgcacaggtggcagctgcacattggacggccaggtctac
aatgacagggacgtctggaaaccagagccatgccaaatctgcgtgtgcgacagcggcacc
gttatgtgcgacgaggtgatctgcgaggacacggcccactgctccaacccagtgattccc
cacgacgagtgctgccccgtctgcccagatgacgaattcaaggagcccggtgttgaggga
ccaagaggtcctgccggtgagaagggtgacaggggtcttcctggacctcccggcaatgac
ggaatccctggacagcctggccttcctgggcctccaggcccccctggacctcctggcctt
ggtggaaacttttctcctcagatgtctggtggatatgatgagaaatccggaggagcaatg
gccgtcccaggccccatgggacctatgggcccccgtggaccccctggacctcctggatct
tctggaccccaaggatttactggcccccctggtgagcctggtgaggctggtgctcctggt
ccaatgggtccccgtggtgcagctggtccccctggaaagaacggagaggatggtgagtct
ggcaaacccggtcgccctggtgagcgcggaccccctggcgcacagggtgctcgtggattc
cccggaaccccaggacttccaggcatcaagggacacagaggattcagcggtctagatgga
gctaagggagacactggccctgctggacctaagggtgagcctggtgcacctggtgagaac
ggaactcctggagctatgggtcctcgtggtctgcctggtgagagaggccgcgctggtcct
cctggtgctgctggtgctcgtggtaatgatggtgccgctggagctgctggtcctcctggc
ccaactggccctgctggtccttcaggattccctggtggccctggagctaagggagaggtt
ggtgctcagggagctcgtggtgcagagggaccccagggagcccgtggtgagcctggtaac
cctggacctgctggtgctgctggacccgctggtaacaatggagctgatggtgcccctggt
cttaagggtgctcctggtgctcctggtattgctggtgctccaggtttccctggacctcgt
ggtccttctggacctgctggagctgctggtgcccctggccctaagggtaacactggtgag
gttggtgcccctggtgccaaaggagaggctggtgccaagggagaggctggtgcccaagga
gttcagggtccccctggcccctctggtgaggaaggcaagagaggacctcgtggtgagccc
ggttctgctggtgcccgcggaccccctggtgaacgtggtgctcctggtgctcgtggtttc
cctggtgctgatggatctgcaggtcctaagggtgccactggtgagcgtggaggccctgga
attgttggacctnngggtgccactggtgagcctggccgcaatggtgaacctggtatgcca
ggatccaagggtatgactggtagccctggcagccctggacctgatggaaagaccggagct
actggtactcctggacaagatggccgccctggaccacctggccccgttggagctagagga
cagcctggtgtcatgggattccctggacctaagggtgctgctggtgaggctggcaaacct
ggtgagagaggtgtgatgggtgctcttggtgccactggcgctcccggtaaagatggtgat
gttggtgcccctggtgctcctggacctgctgggcctactggtgagagaggtgaacaggga
cctgctggtcctcctggattccagggtctgccaggacctcagggtgcaactggtgagcct
ggcaagtctggtgagcagggtgttcctggagaggctggagctcctggacctgctggatcc
agaggtgacagaggattccctggtgagcgtggtgcccctggccctgctggtcctgctggt
gcccgtggttctcctggttcagctggtaatgatggtgccaagggtgatgctggtgcccca
ggtgcccctggcgctcagggtcctcccggacttcaaggaatgcccggtgagcgtggtgct
gctggtctgccaggtcttaagggtgacagaggtgaccaaggtgccaagggtactgatggt
gctcctggtaaagatggcatccgtggtatgaccggaccaattggacctcctggacctgct
ggagctcctggtgacaagggagagactggtgctcctggacttgttggacctaatggtgcc
cgaggaccacctggtgagcgtggagagactggtgctcctggacctgctggatttgctgga
cctcctggtgccgatggtctgcctggtgctaagggagagcctggagacaatggtgctaag
ggtgactctggtcctccaggacctgcaggagcaactggtgcccccggacctcagggtccc
gttggttctactggacccaagggtgcccgtggtgctgctggtcctcctggtgctactggt
ttccctggtgctgctggcagagttggaccccctggccctgctggaaacgctggaccccca
ggaccttctggagcccctggtaaggagggccagaaaggtaaccgtggtgagactggacct
tcagggcgcactggtgaaattggtgctgccggaccacctggtgcccctggtgagaaagga
actcctggagctgagggtcctcctggctctgctggtatccctggacctcaaggtattgct
ggtcagcgtggtattgttggtctccctggacaaagaggcgagcgtggtttccctggtctc
cccggccaatctggagagcctggcaaacaaggaccttctggtccctctggtgaacgtgga
cctcctggacccatgggaccccctggattggctggacctcctggtgagcctggtcgtgag
ggaactccaggtaatgagggttctgctggacgtgatggtgctgctggaccaaagggtgac
cgtggtgagactggcgctgctggcactcccggtgctcctggacctcctggtgctcctgga
cccattggccctgctggaaagactggtgatcgtggagagtctggccctgctggtcctgcc
ggtgctgctggccctgctggtccccgtggacccgctggtcccgctggagctcgtggagac
aggggtgagactggcgaggctggcgagagaggcatgaagggacacagaggatttaccgga
atgcagggacccccaggacctccaggaccctctggagagcctggacctgctggagcttct
ggacccgctggacctagaggcccaggtggatcttctggagccgctggtaaggatggtatg
agcggacttcctggacccattggacctcctggaccccgtggtcgcaatggagaaattgga
ccagctggacctcctggacctcccggactccctggacctcctggaccctctggtggtgga
tttgatatcggcttcattgcccagccagtggagaaggcccctgatcccttccgttcctac
cgtgccgatgatgccaatgtgatgcgcgaccgtgacctcgaggttgacaccaccctcaag
tccctgagccaacagattgagagcatcatcagcccagatggcaccaagaagaatcctgca
cgcacttgccgtgacctgaagatgtgccacccagactggaagagtggcgagtactggatt
gaccctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggaaactggc
gagacctgcgtctacccagctgagtcctccattcccaagaagaactggtacacaagcaag
aacatcaaggagaagaagcatgtctggttcggagaggccatgaccgatggcttccagttc
gagtatggcagcgagggctctaaggctgaggatgttaacattcagctcaccttcctgcgc
ctcatgtccactgaggcctcccagaatatcacataccactgcaagaacagcattgcatac
atggaccaggcttctggcaacctgaagaaggctcttctgctgcagggctccaacgagatc
gagatcagagcagagggcaacagccgcttcacatacagtgtcactgaggatggttgcacg
tcgcacaccggtgcatggggcaagacagtcattgactacaaaacaacgaaaacatcccgt
ctgcctattattgacatcgcccctatggacgttggtgcacctaatcaggaatttggcatt
gaagttggcccagtctgcttcttgtaa
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integrated database retrieval system
