Cyprinus carpio (common carp): 109054318
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Entry
109054318 CDS
T05134
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109054318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109054318
03009 Ribosome biogenesis [BR:
ccar03009
]
109054318
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109054318
Spliceosome [BR:
ccar03041
]
Complex A
U1 snRNP components
U1 related factors
109054318
Complex B
109054318
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
Pre-60S particles
Helicases
109054318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109054318
NCBI-ProteinID:
XP_042585110
Ensembl:
ENSCCRG00000004157
UniProt:
A0A8C1XWJ7
LinkDB
All DBs
Position
A3:complement(30242890..30248211)
Genome browser
AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRGSYSSGPPRFGGSRNGPPAGKKFGNPGERLRKKHWNLDELPKFEKNF
YQEHPEVSRRSAQDVEHYRRTKEITVKGRDCPKPIVKFHEANFPNYVMDVIAKQNWTDPT
PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPSIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKRRCDDLT
RSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDIKFVINYDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDR
GGRSRGGRGGGYRDDRRDRHTGGRRDFNSYSQDNRNSDSYGQKKVFGNKTQNGSSGYNSS
NSFNAGYSNNGQGNFGSQSGGYGNQGYQNQQFAPNQGAVQNSMNHPPPFPFNPQQMPQSM
PFPMAPPTFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggtcgtgacagaggtagttacagcagtggtcct
ccacgttttggaggcagcagaaacggacctcctgcgggcaagaagttcgggaatcctggt
gaacgtctgcggaaaaagcactggaacctggacgagctccccaagtttgagaagaacttc
taccaggagcatcctgaggtttctcggcggtcagctcaagatgttgaacactacaggaga
accaaggagatcacggtgaaaggtcgagactgtcccaaacccattgtaaagttccatgaa
gcaaactttccaaactatgtgatggatgtgatcgctaaacagaactggaccgatccaact
cctatccaggctcaggggtggccagtggcactgagtggcaaagatatggttggcattgca
cagaccggctctggaaaaacgctctcgtatctgcttccctctattgttcacataaaccac
caaccattcctggaacgtggcgacggtcccatttgcttggtgttggcacccacccgtgaa
ttggcgcagcaggtccagcaggtggcggcagagtacggcaaggcttctcgtctcaagtcc
acctgcatctacggaggcgctcccaaaggaccacagatccgggatctggaaaggggtgtc
gagatttgtatcgccacacccggaagacttatcgatttccttgaagttggaaagacaaat
ctgcgcagatgcacgtaccttgtgcttgacgaagctgacaggatgcttgacatgggattt
gaacctcagattcgaaaaatcctggaccaaattagaccggacagacagactcttatgtgg
agcgctacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgta
cagatcaacgtcggtgcgctgcagctcagcgccaaccacaacatcctacagattgtcgac
gtttgcaatgatggcgaaaaggaagacaaactgatgcgtctgctggaggaaatcatgagc
gagaaggagaacaagaccattatttttgtggagaccaagagaaggtgtgatgatctcacc
aggagcatgcgtagggatgggtggccagcaatgggcatccatggagacaagagtcagcag
gaaagagactgggtgctcaatgagttcaaatatggcaaagcgcccatcctcattgccaca
gacgttgcctccagaggactagatgtggaggacatcaaatttgtcattaattatgactac
cccaacaattctgaggactacattcaccgcattggccgtacggctcgcagtcagaaaacc
ggcacagcctacactttctttacgcccaacaacatgaaacaggctcacgacctcgtctcg
gtcctccgtgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacaga
ggaggtcgttcaaggggaggtcgaggtggagggtatagggatgaccgccgcgatcgccac
actggcggcaggcgggacttcaacagctacagccaggataaccgtaacagtgactcttac
gggcaaaagaaggtgtttggaaacaaaactcaaaacggatctagcggttacaacagcagt
aacagcttcaacgcgggatacagcaataacggacagggtaacttcggcagtcaatctggt
gggtacggaaaccaaggctatcagaaccagcagtttgctcccaaccaaggggctgttcag
aacagcatgaaccaccctccaccgttccccttcaacccccaacagatgccacagtccatg
ccattccccatggctcctcccacattccctcagtaa
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