Cyprinus carpio (common carp): 109055219
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Entry
109055219 CDS
T05134
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
ccar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109055219 (vps39)
04148 Efferocytosis
109055219 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109055219 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109055219 (vps39)
Membrane trafficking [BR:
ccar04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109055219 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
CYP38_PsbQ-like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
109055219
NCBI-ProteinID:
XP_042598838
Ensembl:
ENSCCRG00000010544
UniProt:
A0A9R0AHT5
LinkDB
All DBs
Position
B17:complement(24838323..24857125)
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AA seq
871 aa
AA seq
DB search
MNSFLKRRRVSLMCDNRTVFADDWLLVGTKPGHLLLYGIKKDAGTNRFEVTLEKSNKNFS
KKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVISKARGATLFACDLQSSSGEAKLR
MCVAVKRKIQLYYWKDRDFHELQGDFTAPDVPKSMAWCENSICVGFKRDYYLIRMDGRGS
VKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAMEHQPP
YIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITSAGSNVVYVASNHFVWRLVPISIASQI
RQLLQDKQFELALQLAKMKDDSDADKRQQIHHIQNLFAFNLFCQKRFDDSMQVFSKLGTD
PTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLAQKRSHLVKQLNDPD
PFATSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEESEYVL
KKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLDIIFE
FSPWVLKICSEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIHLWDETQP
EFHNVLIQLYLEKVQGLMKVYLSSLPEGVPAVAAGKEAGELGEYRNKLLSFLEVSSSYEP
EGLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHGHYDPSANGNKD
VYLSLLRMYLSPPDVHFLGPIKMQLCEPQPNLQAALRVLQLHHSKLNTTKAINLLPANTQ
IREIQVFLESVLEEKAGRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCVITDEKTCRVCK
KKIGNSAFARYPNGVVVHYFCCKDRSVCPEE
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgaactcatttttaaaacgtcgccgtgtgtctctgatgtgtgacaatcgtactgtgttt
gcagatgattggctccttgtggggaccaaaccgggccatctccttctgtacgggatcaag
aaagatgcaggtacaaacaggtttgaagttacattagagaaatccaataagaacttctca
aagaagattcagcagctgtttgtggtgtcacagtacaagattttggttagtttgttggaa
aataacatccacgttcacgacctgctcacgttccagcagataactgttatatccaaagcc
agaggagccactctgtttgcctgtgacctgcagtccagctcaggcgaggccaaactgcgc
atgtgtgttgcagtcaagaggaaaattcagctgtattactggaaggacagagatttccat
gaattacagggggatttcaccgctccagacgttcccaagtccatggcttggtgtgagaac
tccatatgtgtgggtttcaaacgagactactatctgatccggatggacggacgtggctca
gtcaaggaactcttccccacagggaaacagctggaaccactggtggccccgctggctgat
gggaaggtcgcggtgggtcaggatgacctcacggttgttttgaacgaagaaggcgtctgc
actcagaaatgtgcccttaactggaccgacattcctgtcgcaatggagcaccagccaccg
tacatcatcgcagtgctgccacgctatgtggagatccgcacccttgagcccagactgctg
gtgcagagcatagagctgcagagaccgcgcttcatcacctccgctggatcaaatgttgtg
tacgtcgcgagcaatcacttcgtttggcgtctggtgcccatctctatagccagccagata
cgacagctgctacaggacaagcagtttgaactggcgcttcagctagcaaaaatgaaggat
gattcagatgcagacaagagacaacagatccatcacattcagaacctgtttgccttcaac
ttgttctgtcagaagcgctttgacgactccatgcaggtgttttctaagttaggcacagac
cccactcatgttattggactgtatccagacctgctgccctctgactaccgcaaacagctg
cactaccccaaccctctgcccacgctgtctggagccgagctggagaaagcccacctggcg
ctcatagactacctggcacagaaacgcagtcatttagtgaagcagctgaatgacccggac
cccttcgccacctcgcctctcatggaggggacccccaccatcaagagccgcaagaagctc
cttcagatcatcgacaccactctgctgaaatgttacctccacaccaatgtagccttagtg
tcgcctctcctgcggctagagaacaaccactgtcacatcgaggagagcgagtacgtgctg
aagaaagcccacaaatacagcgaactcatcatcctctatgagaaaaaaggccttcatcag
aaagctctgcaggttctgctggatcagtccaccaaagccaactctcctctgaaggggcat
gagaggactgtacagtatcttcagagactcggtgtggagaacctggacatcatttttgag
ttttcgccgtgggttctgaagatttgttcagaagatggactgaagatcttcaccgaggac
ctgacggaggtggagactctgcccagggataaggtgttgaacttcctgaaggagggcttc
aaggagctggccatcccgtacctggagcacatcattcacctgtgggacgagacacagcct
gagttccacaatgttctgatccagctctacctggagaaggtgcaaggcctcatgaaagtg
tacctcagctcactgcctgaaggtgttccagctgtggctgcaggaaaggaggcgggagag
ctgggagagtacaggaacaagcttctgtcgtttctggaagtgtccagcagctatgagccg
gagggactcatcagtgatttcccgtttgatggtctgttggaggagagggctcttcttctg
ggtcgtatggggaaacatgagcaggctcttttcatctatgtacacattctcaaagacacg
cgtatggctgaagagtactgccacggtcattatgatccatcagcaaacggcaataaagat
gtgtatctgtccctgctgcgcatgtatctgtctcctccggacgtgcacttcctcgggccc
ataaagatgcagttatgtgagccacagccgaacctccaggccgccctgagagttcttcag
ctccaccacagcaagctgaacaccaccaaagccataaacctgctgccagccaacacacag
atccgagagatccaggtgtttctggagagtgtgctggaggagaaggctgggaggaagcgc
tttgaccaggtcctgaagagcctgctacaggccgagttcctgcgggtgcaggaggagcgt
atctttcaccagcaggtgaagtgtgtcatcacagatgagaaaacctgcagagtgtgcaag
aagaagattggaaacagtgcctttgccaggtatcctaacggtgtggtggtgcactacttc
tgctgtaaagatcgcagcgtgtgtccagaggagtag
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