Cyprinus carpio (common carp): 109055290
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Entry
109055290 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccar01009
]
109055290
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109055290
04131 Membrane trafficking [BR:
ccar04131
]
109055290
03036 Chromosome and associated proteins [BR:
ccar03036
]
109055290
Enzymes [BR:
ccar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
109055290
Protein phosphatases and associated proteins [BR:
ccar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109055290
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
109055290
Membrane trafficking [BR:
ccar04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
109055290
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
109055290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
109055290
NCBI-ProteinID:
XP_042617619
Ensembl:
ENSCCRG00000000990
UniProt:
A0A9R0B003
LinkDB
All DBs
Position
A8:complement(4453804..4467534)
Genome browser
AA seq
1106 aa
AA seq
DB search
MDPVPDSRGSIRSPRATSETKRENNNQNQKKNLQEARRKGRMDRSKEEEEMSNELKNLDV
RGKTKATGTGLVYVDAFTHFHCLWDASHLECPARVSTVMEMLETEGLRGRCVQVEARAVS
EAELLLVHTKEYVELMKSTQKMTEEELKTLAHKYDSVYLHPEYXSSPLLPSGISTTSPWI
KLLHKIITAQLRNGFSINRPPGHHAHADKMNGYCMFNNLAIAARYAQKQHGVKRVLIVDW
DVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKT
GMEDGDYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPQCFSILTHMLKG
VAQGRLVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGAPSESALKSISETISALY
PFWKSLQIFEGGPLSDVLPLPAPVCAEVKASSLITGLVYDQRNTPQQNMWXYIRXGCIDS
HSHHPELPQRISRIFSRHEELGLLSRCLQIPARLATEEELALCHSSAHISTIKSTEHMKP
RDLHRLGNDYNSIYICNESYTCALVAAGSCFNSVRAIITGQVRNGVAIVRPPGHHEEKKT
SCSFSFNNTAALTARYAQSITHESLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYED
GTFFPSSEDANYDKVGVGKGTGYNVNIPWNGGKMGDPEYMAAFHHIVMPIAREFAPELVL
VSAGFDAARGDPLGGYQVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTS
MLLGDSPPSLDNLPPPKTSATVTINNVLRAHAPFWSSLRIQIPESLRLTLPSPKSKGKRA
SAGKSKKSPRQSTPSQSPGQTPQHLEQSSLDELSKDLLSLNLNTSTSSNPSPASVPIGGA
RRKVKPNPQRDSAGQESPLKLKSEKASAGDGTHAEITAVKAETPERTIPESVVSGNSAAV
DDQESSVLEAAGGHATMMSVLGNVFGAQATDLDTMYVVDPLSWCPHLESVRPVPAGGIDV
FLPCEECGGDTENWICLFCYKVLCGRYVKQHMVTHGQVSGHPMVLSFADLSVWCYACESY
IHNKVLHEAKSAAHLVKFGEEIPPFS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgttccagattccagaggttctattcgatcgccgagagcaacatctgaaacc
aaaagagaaaacaacaatcagaaccagaagaagaatctgcaggaggcgcggaggaagggc
aggatggatcggagcaaagaggaggaggagatgagcaatgaactcaaaaacttggatgtt
cgtggtaaaactaaagcaacaggaacaggtctcgtctacgtagatgcctttactcacttt
cactgcctctgggatgccagtcacctggagtgtccagcgagagtgagcactgtgatggag
atgctggagacggaaggtctgcggggacgctgtgtacaagtagaggccagagctgtgtca
gaagctgagctgttactcgttcatacgaaggagtatgtagagctgatgaaatccacacag
aaaatgacagaggaggagctgaagactctggctcataaatatgattctgtctacctgcat
cctgaatattaatcctctcccctcctcccgtctggcatcagtaccacatccccgtggata
aagctattacataaaatcatcacagcacagctgcgtaacggcttctccatcaacaggcct
cctggtcaccacgctcatgcagataagatgaatggctactgcatgtttaataatctggcc
atagcagcgcgctacgcacagaagcagcatggagttaaacgagttctgattgtggattgg
gatgtgcatcacggacagggaatccagtatatttttgaagaggatcccagtgtgctgtat
ttctcagtgcacagatatgaagacggctccttctggccgcatctcaaggagtctgacagc
agctcggtgggttcaggagcaggacagggctacaatatcaacctgccctggaacaagaca
gggatggaggatggcgattacgtcacagctttccagcagctcctgcttccagtggcgtat
gagtttcagcctcagctggtgttagtggcggccggttttgactctgtgatcggtgaccca
aagggtgagatgcgagtgagtcctcagtgtttctccatcctgacccacatgctgaaaggt
gtagcacagggtcgactcgtgctggctcttgagggtggatataacctccagtccacagca
gagggtgtttgtgctagtgtgaggtcactgctgggtgacccttgccctcacctgacctct
cctggtgctccgagtgaaagtgccctgaagtccatctcggagaccatctcagccttgtat
ccattttggaagagtcttcagatttttgagggtggtcctctctccgatgtccttcccctg
cccgctccagtgtgtgcagaagtgaaggcttcctctctgatcactggactagtttatgac
cagagaaatactccacaacaaaacatgtggtaatatataagatgaggatgtattgattcc
cacagtcatcatccagagctccctcagagaatttctcgcatctttagccggcatgaggag
ctgggcctgctgtcccgttgccttcagataccagctcgcctagcaacagaagaagagctg
gcactctgtcacagttctgcgcatataagcactataaagagcacagagcacatgaaaccc
agagatctgcaccgactgggaaacgattacaactccatctacatctgtaatgagagctac
acctgcgccctggtggccgctgggtcgtgttttaactctgtacgggccataatcacaggc
caggtgagaaatggcgtggccatagtccgtcctccgggtcatcatgaagaaaaaaaaaca
tcttgttctttctctttcaataatacggctgctttgaccgcacgctatgcccagagcatc
actcacgaatccctgcgtgtcctcatcctcgattgggatgttcaccatggaaacggcaca
caacacatctttgaggaggatgacagtgttctgtacatctccctgcatcgctacgaagac
gggacattcttccccagctcggaggatgctaactatgataaagtgggggtcgggaagggc
acaggatacaatgtcaacatcccctggaatggaggaaagatgggagacccagaatacatg
gcggctttccatcacatagtgatgccgatagccagagagtttgccccagagctggtgctg
gtgtctgctgggtttgatgcagcacgaggtgatccgttaggagggtatcaggtgacccca
gagggctacgctcacctcacccatcagttaatgagtctggctgcaggaagagtgctagtc
atactggagggaggatataacctcacctccatctctgagtcaatgtccatgtgcaccagt
atgttgctgggagactctcctccgtctctagacaatctgccccctccgaagaccagcgct
actgttaccattaacaatgtcttgcgtgcacacgcccccttttggagctccttgagaata
cagattccagagtcccttcgtttgactttgccgtctcctaaatcgaaaggcaagcgggca
tcggcgggcaagagcaagaaatctcctcgccagtccaccccttcccagagtcctggacag
acaccgcagcatctcgagcagtccagccttgatgagctcagtaaggacctgctctctctg
aatctcaacacaagtacctcatctaaccccagcccagcatctgtccccattggaggagcc
agacggaaggtgaaacccaacccacagagggattcagcaggccaggagtcacccctaaaa
ctcaagtcagagaaagccagcgctggagatggcacgcatgcagagattacagctgtaaaa
gcagagacacctgaacggacaatcccagaatctgtggtctctggaaattcagctgctgtg
gatgatcaggagagttcagtgctggaagccgctggtggtcacgccactatgatgtcagtc
ttaggaaatgtctttggagcacaagccacggatttggacaccatgtatgtggtggacccg
ttgtcatggtgcccacacttggagtcggtgcgaccggtgcctgcaggcggcatcgatgtc
ttcctgccgtgtgaagagtgtggaggtgatacagaaaactggatctgcctcttctgctac
aaggtgctctgtgggcgttatgtgaagcagcacatggtgacccacggacaggtgtcgggt
cacccaatggtgctgagcttcgctgacctttctgtctggtgctacgcttgtgagtcatac
atccacaacaaggtgctccatgaagccaaaagtgccgctcaccttgtgaagtttggagag
gagattcctcctttcagctaa
DBGET
integrated database retrieval system
