Cyprinus carpio (common carp): 109055540
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Entry
109055540 CDS
T05134
Symbol
limch1a
Name
(RefSeq) LOW QUALITY PROTEIN: LIM and calponin homology domains-containing protein 1a
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ccar04990
]
109055540 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
ccar04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
109055540 (limch1a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Dicty_CAD
Motif
Other DBs
NCBI-GeneID:
109055540
NCBI-ProteinID:
XP_042628092
UniProt:
A0A9Q9YXA1
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All DBs
Position
A1:214326..252989
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AA seq
1717 aa
AA seq
DB search
MMRKECVNEELDSPKRSIRDSGYIDSWESERSDSLSPPRHGREDSFDSLDSFGSRSQNTP
SPDTVIRCNSDDSEGDAGQRKLPDVRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTNYI
PAPLRKRRSEREEDWRSLSNSTSPVGGERPLRQERVEVLKEGAVASRSLALQKNFTWADE
KGVELEEAELKKMRKLEKAGIKVLPASVRYNSPIVNPVEASKPKPPSPDIILRRDNEFMR
ATAPHQWDSNEEDDDEEAERKVPDVQKDDLASRRARMNQFKPSVAHHFLPGSCGWKDREK
WEGIRLASQHAVLERMEKMAQEKRSQADSASPEVPIITRKDNPFLNPEKDRGKERDEEDE
KEVEGKIVVPNPHKDDLARRRTGGGPRPPKDAHQSLVQTSITQSDLETWQRLKINTDSSE
SDSTDAEVSIITRKDNPFLTSEKDSECKQENEEGTDREKGARVVMPDVKTDDLARRRGQN
GPVPQRDPRQSLAQTTITQSDLEKWQRLKMNTESSDDPIVPLCQTCLEKGCHSVASKTKV
AKNDLASCRERSSGERRRFVTFGGVTEMKSTSWKEEEEDKEGGEGQGDEAEKLRYLLSMA
HVAVPTIGLGSILTKKAVGSGDAIPEPAPIMPPEPPNPFMFDIKRPLTSTEHRLLEEELV
EKVKDKREDDEEDEEEERQLDIQKDDMLARRTGAFQKPANGTSHNRFLPQPGSKRDGATV
TSLAQKGSILMGTSGDRDLQYLERNIKTKRTKIGQRNEPVDQVQKTPVPVAVVTEKCPEI
LHLSSTNANRSGIYTDDDEWGDDDQLQDFEKDDMLAQRTGSYQKPSAGQDFNVFLHKPGA
VKHKITPVSRSQSHLKPREQETAPSLDSFTLSSVAPAPRDVEDTPRKCPQMMDRQEAGSV
GVVGHESLIKDEPITKSPSPKPHQPSRRPLWQEDDDLPPIFRATSVSETESVSLIDMRDE
EDELAYHQPHSQSRHEHLHNQYNKLREEEDQWQDDLARWKNRRRSASQDLIKKEEERKMM
EKLMSTDGGPGHRRKSIKTYKEIVEEKERREQELHEQYCKASTPEEKAAVLQRYALRFTI
SDAILEKLQLPKLPSAASPMHTPPLHQPEKKLTCTTLAEAEDVEPEQTVHVYQKTAQKQA
PAQPETPEPSSDETIKAPKVLSVPTQVPPAPSKPVPMITPKPYSQPKFSQGLCKSIKSDG
LMRVNGDRTQQENRERDDKDSVSCPQVDLSSAPPNPATQSQQNEELIALEASDHQQSSQT
SVSDQEKEVGKKEKECSLSPQEEDSKEDATTTPSLSEPEGKQPGPDTVMKRNCVVTTTIV
TELTQTHPVPPNDMSSTEQLDSVCNSCDLSSAAESTKAEETSYSLSLTESSHSSSSSRLR
WEFFAPTEGTDYSADCIETPMLNLAKRVDHWTWDPNEERRRQERWQQEQERLLQEKYQRE
QEKLKEEWERAQREVEEEERRHHEEERQILEETVTPLTPRSSGLSSSVVTEAPSLXQPSA
PRDTIVLSLADWERKQEVLEKQEVPEKQEVLEKQENQSNRHSPDQVITAAQQNGQRTEPQ
ESQTATPQLEFIQDGSWSCKSKGRQEDLKKTASLDRKQSPPQSQTTKMRRTGSCENVLGT
HPSKSPTPSQDTPPPSPSRSVSGKKLCSSCAHPLGKGAAMIIESLGLYFHIQCFKCGICK
GLLGDSSAGTDVRIRNGLLNCQECYIKSRAAGQPTTL
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgaaaggagtgtgtaaatgaagagttagactcccctaagcgcagtataagggac
agcggttacatcgacagctgggaatcggagcgttctgattcgctgtctcctccgaggcac
ggccgcgaagattcgtttgacagtctcgactcgtttggctcacgatcacagaacacaccc
tcaccagacacagttattcgctgcaacagtgatgactctgaaggtgacgctggtcaaagg
aagttgccagacgtgcgcaaggatgacatgtctgcccgtcgcgtgtcctacaaagagcct
cgcgcagctctgccctttaatcagtatctgccgaacaaaagcaaccaaaccaactacatt
cctgcccccctgaggaagaggaggagcgagagagaggaagactggaggagtctaagcaac
tcaacgtctcctgtaggaggagaaagacctctcagacaagagcgtgtagaagtattaaaa
gagggggctgtcgcatctcgcagccttgcgcttcagaaaaatttcacctgggcggatgag
aaaggggtagagcttgaggaggcagagcttaagaaaatgaggaagctggaaaaggcggga
attaaagtattacctgcctctgtgcgatataacagtccaattgtgaatcctgtggaggcc
agtaaacccaaaccaccttcaccagacatcattctccgacgtgacaatgagttcatgcgg
gccaccgctccacatcagtgggactcgaatgaggaagatgatgatgaagaagcagaacgg
aaggttccagatgtccaaaaggatgatcttgcttctcgcagagcacgcatgaatcaattc
aaacccagtgtggcgcatcacttcctgccaggctcttgtggctggaaggaccgagaaaaa
tgggagggaatcaggctggcatcccagcatgccgtgttggagaggatggaaaaaatggca
caggagaaaagaagtcaggctgactccgcctcccctgaggtgccaatcataactcgtaag
gacaaccctttcctgaatcctgaaaaagacaggggaaaagagagggatgaggaagatgag
aaagaggtagaggggaagatagttgtcccaaacccacacaaagatgatcttgcaaggagg
cggactgggggagggccacgccctcccaaagatgctcatcagtcattggtccagacttcc
atcactcagtcagacctggagacatggcagagactcaagattaatacagatagcagtgag
tctgactccaccgatgctgaagtgtcaatcataactcgcaaggacaaccccttcctgacc
tctgagaaagacagtgagtgtaagcaggagaatgaggagggtacagacagagagaaaggg
gcgagggtggtgatgcctgatgtaaagacagatgacctggccagaaggcggggccaaaat
gggcctgtcccacagagggacccccgtcagtcattggctcaaactaccatcactcagtcg
gacctggagaaatggcagaggctcaagatgaatacagagagcagcgatgaccctattgtc
cctctgtgtcagacgtgtcttgagaaaggctgccactctgttgcctccaagacgaaggtt
gccaagaacgacctggccagttgccgagaacgttcctccggtgaacggaggcgttttgtg
acttttgggggtgtgacagagatgaagagtacttcctggaaggaggaggaggaggataag
gaagggggagagggacagggggacgaggcagagaagcttcgatatctcctctcgatggca
catgttgctgtgcccaccatagggctgggctccatactgacaaaaaaagcggttggcagt
ggagatgcaatccctgagcctgctcctatcatgccccctgaacctccgaatcctttcatg
tttgacattaaacggcctttgacctccaccgagcacaggttgctggaggaggaactggtg
gagaaagtgaaggataagagggaggatgatgaagaggatgaagaagaagagaggcaactg
gatatacaaaaggatgacatgctagctcgtagaacaggagcatttcagaagccagcaaat
gggacttcacataacagattcctcccgcagccaggttccaagagagacggtgctacagtg
acttccttagcccagaaaggaagtattctgatgggcacgagtggagacagagacctccaa
tacctggagagaaacataaagacaaagagaaccaagattggacagagaaatgaaccagtc
gaccaagtacaaaagacacccgttccagttgctgtagtaacagaaaaatgccctgaaatt
ttacatttgtcttcaactaacgccaatcgctctggcatttacactgatgatgatgaatgg
ggggatgacgatcaattgcaagattttgagaaagatgacatgcttgcacaaaggactgga
tcttaccaaaagccaagtgcaggacaggattttaatgtttttttgcacaaacctggtgct
gtcaaacataaaatcactcctgtcagtagatctcagtcacacctcaagcctagagagcaa
gagacagccccatctctggacagcttcacccttagctctgtggccccggccccaagagat
gttgaggacacgcctaggaagtgccctcagatgatggacaggcaggaggcaggctctgtg
ggtgtggtgggacatgaaagtcttattaaagatgagcctattaccaaaagcccctccccc
aaacctcaccaaccctcacgtcgccccctttggcaggaagatgatgatctccccccaata
ttcagagctactagtgtttctgaaacagagagtgtgagtttgattgacatgcgtgatgaa
gaggatgagctggcctaccatcagccgcacagccaatcacgacatgagcacctacacaac
cagtacaacaaactccgagaggaggaggaccagtggcaggacgacttggctcgctggaag
aatcggaggcgaagtgcatctcaagatttgatcaaaaaggaagaagagaggaagatgatg
gagaagctaatgtcaacagatggaggacccggtcatcgccggaagagcatcaagacatac
aaagaaattgttgaggagaaggaacgtagggaacaggagctacatgaacaatactgtaaa
gcctccactccagaagaaaaggcagctgtgcttcaacgctatgctctccgtttcaccatc
agtgatgccatattggagaaactccagctccccaagctgccttctgcagcctcaccgatg
cacacgccacctctccatcaacctgagaagaaactgacctgcaccaccttagcagaagca
gaggatgtagagcctgaacaaactgtccatgtataccagaagactgcacaaaaacaggca
ccggcacagcccgaaacccctgagccatcatctgatgagaccatcaaagctccaaaagtc
ctgtcagtgcctacacaagttcctcccgccccctcgaagcctgtacccatgatcacccca
aaaccctacagccagcccaaattcagccaaggcctctgcaaatcaataaagagcgatggg
ctgatgcgtgtgaatggtgacaggactcagcaagagaacagagagagggatgataaagat
tctgtgtcgtgtcctcaagtcgacttatcttccgcacctccaaatccagccactcaaagc
caacaaaatgaggagctaattgctttagaagcctcagaccaccagcaaagctcacagact
tccgtttctgaccaggagaaagaagtcggaaagaaggaaaaagagtgttctcttagtcct
caagaagaggatagcaaagaagacgccacaactacaccgtcactgtcagaaccagaagga
aagcagccagggcctgacacagtgatgaagcgcaactgtgtggtcacaacaaccatagtg
acagaactcactcagacacaccccgtcccaccaaatgacatgtccagcacagagcagctt
gattcagtctgtaattcatgtgatctgagctcagctgccgagtccaccaaggctgaggag
acttcatactcactctcactgacagagtcctcacattcctctagtagctctaggttacgc
tgggagttcttcgctccaacagaggggactgactactccgctgactgtattgaaacccca
atgttgaaccttgcaaaaagggttgaccactggacatgggatcctaatgaagagcgtaga
cggcaggagaggtggcaacaggagcaggaacgcctgctgcaggagaaatatcagcgagag
caagagaagctgaaggaggagtgggagagagcgcagagagaagtggaagaggaggagagg
agacaccatgaagaggaaagacagatactggaggaaaccgtgaccccactgacccctcgc
tcctcaggtttatcatccagtgtggtgacagaagctccgtccctcnaccagccctcagcc
ccacgtgacaccattgtcctctccttggctgactgggaaagaaaacaggaagtgctggag
aaacaggaagtgccggagaaacaggaagtgctggagaaacaggagaaccagagtaacaga
cacagccctgatcaagtaatcacagcagctcaacagaacggtcagagaactgaacctcag
gagagccaaacagctacaccacaactggagtttatacaggatggctcttggagctgtaag
tctaaaggaaggcaagaggatttgaagaaaactgcctcactggatcgtaaacagagtcca
ccccagagccagaccacaaagatgaggaggactgggtcgtgtgaaaatgttttagggaca
cacccatcaaaatcacccacaccatcacaagacacgccacctccatcacccagcaggtca
gtaagtggaaagaagctttgctccagttgtgcacatccgctgggtaaaggagcagctatg
atcattgaaagcttggggttgtacttccatattcagtgttttaagtgtggcatatgtaaa
gggttactgggtgactcaagtgctggaactgacgtcagaattcgaaatggacttcttaac
tgtcaagaatgctacataaaatcaagggctgctggccagccaacaacattgtga
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integrated database retrieval system
