KEGG   Cyprinus carpio (common carp): 109055925
Entry
109055925         CDS       T05134                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ccar  Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccar04121]
    109055925
   03400 DNA repair and recombination proteins [BR:ccar03400]
    109055925
Enzymes [BR:ccar01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109055925
Ubiquitin system [BR:ccar04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109055925
DNA repair and recombination proteins [BR:ccar03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    109055925
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 zf-ANAPC11 ResIII HDA2-3 zf-Nse MS_channel_2nd zf-RING_6 zf-rbx1 zf-RING_11 Prok-RING_4 GTP_EFTU_D2
Other DBs
NCBI-GeneID: 109055925
NCBI-ProteinID: XP_042629427
UniProt: A0A9Q9YZV0
LinkDB
Position
A2:complement(12250393..12262237)
AA seq 946 aa
MQSSNINASTSASPRYALIDFLDVGGTMTISQEIANLTEDSGQDLPEENVQIGSIQGTVV
GLRYYTGTVNRGEMVSLVRQPQNPYDRNAVMVANVFGSQVGHIKKELAAPMAYIMDNNLA
RVEGVVPYGEKNTFSMPVNLTFWGREENREAVHNQMRCHGFRLGTEFKGGTTQTSVGRDL
LGLSSKISAIPLTEEELKNAFDKLFDDLMEDKTREMEPAEAVCTSLLPHQKQALSWMTSR
ENSNDLPPFWEEKHGLYFNVLTNFAIKERPEKVLGGILADDMGLGKTLTTIALIVSNFHN
GKPLPLEQCEGSSMSSTCRKKSTSKDHEPVSLSQLKRLHADGVTADIIEEDVPQKKAKTT
ANPAKKPADTKKGVVLLDDVDFASALECTSSQIGPAKKSAKKGSGTGKVPSGGGGGSGAR
ATLIVCPLSVLSNWLDQFEQHIRADVTLKVYLYYGAERIRSVNLLSEQDVVLTTYNVLSS
DYGNKGNSPLHKVSWLRVVLDEGHVIRNPNALQSKAVLELQSERRWILSGTPIQNSLKDL
FMLLSFLKLKPFDVKEWWNRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVAGRTLV
QLPERRVFVQHVILSEEEREEYEQVRREGRKIVDRYFEEGTVMTNYADVLAILVRLRQHC
CHPSLVGKYTRADDPGTPSELRERLINKITLVLNSGSDEECAICLDSLRQPVITYCAHVY
CRPCICEVIRSEKEQARCPLCRAPIKTKELVEYPGEEMEAGPATGENCRSSSKVDALMSN
LLKLRNEDPTVKSLVVSQFTRFMDLIEVPLREYGFSFTRLDGSMAQKTRAKAIQDFQDSS
PGSPTIMLLSLKAGGVGLNLTAASHVFMMDPAWNPAAEDQCVDRCHRLGQSRDVVITKFI
VKDSVEENMVKIQKKKQELVDKAFGVKKPQDLKQARIDEIRALMEI
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgcagtcatcaaacatcaacgcctcgaccagcgcctcgccacgatacgccctcatagat
ttcctggatgtgggtggcacaatgaccatatcccaagaaatagcaaacttgacagaggat
tcggggcaggacctgccagaggagaatgttcagatcggttcgattcaaggcacagttgtt
ggtctgcgctactacactggaacggtcaatagaggagagatggtgtccttggtgaggcag
ccgcagaatccatatgaccgaaatgcagtgatggtggctaatgtgtttggaagtcaggtg
gggcatatcaagaaagagctggcagcccctatggcctacattatggacaacaatttggcc
agagtggaaggggttgtgccctatggagagaaaaatacattttcaatgcctgtaaacctc
acattctggggcagagaggagaaccgagaagctgtgcataatcagatgagatgccatggt
ttcagacttggcactgagttcaaaggaggcactacacaaacatctgtgggtagagatctg
cttggtttgtcttcaaaaatatctgccattcctttgactgaagaagagctgaaaaatgcc
tttgacaagctattcgatgatttaatggaggataaaaccagagaaatggagccagcagag
gcggtgtgcacttccctgctcccacatcaaaagcaggcgctctcgtggatgacctctcgt
gagaacagcaacgatctgcccccattctgggaggagaagcatggcctctactttaacgtt
ctcactaactttgctataaaggaaaggccagagaaagtgcttggtgggattttggctgat
gacatggggctgggaaaaaccctcaccaccatcgccttgatagtctctaatttccacaat
gggaaacctctacccctggaacaatgcgaaggatcatccatgtcttcaacttgcagaaag
aaatcaacctcaaaagaccatgaaccagtgagcttgtcccagttgaaaagactgcatgct
gatggtgtcactgctgacattattgaggaagatgtacctcaaaaaaaagcaaaaaccaca
gcaaatcctgctaaaaagcctgccgacaccaagaaaggagtggttctgctggatgatgtg
gactttgcttccgctctggagtgcacttcctctcagattgggcctgcaaaaaagagtgcg
aagaagggttctggcactggtaaggtcccatctggaggtggtgggggctcaggggccaga
gccactttgattgtatgtcctctgtctgtccttagcaactggctggaccagtttgagcaa
catatccgagctgatgtcacattaaaggtgtatctgtactatggtgctgagcgcatccga
tctgtcaaccttctgtctgagcaagatgtggttctcacaacatacaatgtgctttcatca
gattatgggaacaaaggcaacagtcctctgcacaaagtgagctggctgagagtagtgctg
gacgagggtcacgtcatcagaaaccctaacgctcttcagagcaaagctgtactggagctg
cagtcagagcgcaggtggatcctgtctggaacccctattcagaactcgctgaaggatctc
ttcatgctgctgtccttcttgaagctgaagccttttgatgtgaaggagtggtggaacaga
atcattcagagacctgtgaccatgggcgacagagttggacttaagaacttacaagcacta
gtaaagggcatcacattgaggcgcactaagaacagtaaagtggccgggcgcacgttggtg
cagttacctgaacggagagtgtttgtgcagcatgtgattctctctgaggaggagagggag
gagtacgaacaggtcaggagagagggcaggaagatcgttgacaggtattttgaagaggga
actgtcatgacaaactatgctgatgtcctggccatcctggttcgtctgaggcagcactgc
tgccaccccagtcttgtgggcaaatacacaagggcagatgatcctgggacacctagtgag
ttgcgggagcgtctcatcaataagatcacattggtgctgaactctggctcagacgaggag
tgcgccatctgtctagactccctgcgtcagcctgtcatcacctactgcgctcatgtgtac
tgcaggccctgcatctgtgaggtcatccgatcagagaaggagcaggctagatgtcccctg
tgtcgtgctccgatcaagaccaaagagctggtggagtatcctggagaagagatggaggct
ggaccagccactggggagaactgccgatcaagttccaaagtggatgctttgatgagcaac
ctgttgaagctccgcaatgaagaccccactgtgaagagtcttgtggtttctcagtttacc
aggtttatggatcttatagaagttcccttgagggaatatggattctctttcacacggctg
gatggctctatggctcagaagaccagagcaaaagccattcaggattttcaagactcctct
ccaggaagtcccaccatcatgttactgtcactcaaagctggaggggttgggcttaatctg
actgctgcttcccatgtcttcatgatggatccagcttggaatcctgcagcagaggatcag
tgtgttgacagatgtcatagactgggccagagcagagatgtggtgatcactaagtttatt
gtgaaagattctgtggaagagaacatggtgaagattcagaagaagaagcaggagctcgtg
gacaaagcttttggagtgaaaaagccacaggacctaaaacaggctcggatagatgagatc
cgagccctcatggagatttag

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