Cyprinus carpio (common carp): 109056007
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Entry
109056007 CDS
T05134
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109056007
09124 Replication and repair
03420 Nucleotide excision repair
109056007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109056007
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109056007
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109056007
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109056007
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109056007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
zf-UBP_var
VasI
Motif
Other DBs
NCBI-GeneID:
109056007
NCBI-ProteinID:
XP_042623513
Ensembl:
ENSCCRG00000048913
UniProt:
A0A9R0B661
LinkDB
All DBs
Position
A12:12285625..12298430
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQDTEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFDYTNDRALRRTLQEDVVKDVMTNAHVQSSLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVYDLSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFEWLLGEIETKFNQSIAH
PGEMVGALAAQSLESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSL
TVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEM
PDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINSGFGDDLNCIFNDDNAEKLVLRI
RIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKK
IIITEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALE
RELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVL
MEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPT
GMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP
GYSPAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtccgttactgaagggggcatcaag
taccctgagactacagaaggagggcgccctaaactggggggacttatggacccccggcaa
ggggtaattgagagatcaggcagatgccagacgtgtgcaggtaacatgactgagtgccct
ggtcatttcggtcacattgagctggcaaagccagtttttcatgttggcttcatcacaaag
atcatgaaggtcctccgctgtgtctgtttcttctgttcgaaactgcttgtggacgcgaac
aatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccacgtaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aaatttggagttgagcagcaggacacagaagaagacctcaccaaagagaagggtcatgga
ggctgtggcaggtaccagccgcgtatccgtcgctctggcctggagctgtatgctgagtgg
aagcacgtgaatgaagactcacaggagaagaagatcctcctcagtcctgaacgtgtgcat
gagatcttcaaacgcatttcagatgaagaggacatgatcttgggtatggaccccaaatat
tcccgtcctgagtggatgatcgtcacagtgttgcccgtgccccctcttgctgtgagacca
gctgtggtcatgcagggctctgctagaaaccaggatgatttaacacacaagttggctgac
attgtgaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagcacatgtt
atagcagaggatgtcaagctgcttcagttccacgtggccactatggtagacaatgaactg
ccaggtctacctagggcaatgcaaaagtctggtcgtccactaaaatctatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagacttctct
gcccgaactgtcatcacgccggaccccaacttgcagatcgaccaggtcggggttccccgt
tccatcgccgcaaacatgaccttccccgagatcgtcacaccctttaacattgacagactg
caagagcttgtgaggagaggtaacagtcagtaccctggagccaaatatatcatccgagac
aacggggacagaattgacctgcgattccaccctaagccaagtgaccttcaccttcagatt
ggatacaaagttgaaaggcacatgtgtgatggagacattattgtgttcaacagacagcct
acgttgcacaaaatgtctatgatgggccacagagtgcgaatcttgccatggtcgacattt
cgactcaaccttagtgtgacaaccccatacaatgctgactttgacggcgatgagatgaac
ctgcacttgccacagtctctggagacccgtgctgagatccaggagctggccatggtgcct
cgtatgatcgtcacaccacagtccaacagacccgtcatgggtattgtgcaggacaccctg
acagctgtgcgcaagtttaccaagagagatgtcttcttagagaggggtgaggttatgaac
ctcctcatgtttctctccacatgggatgggaaagtgccccaaccggctatcttgaagcct
cgacctctctggactggcaaacagatcttcagcctgatcatccctgggcacattaatgcc
atccgcacacacagcactcaccctgatgaagaggatagcggcccttataaacacatctcc
cctggagacactaaggtgattgtggagaacggtgagctgatcatggggatcttgtgtaag
aagtcactgggaacctcagctggctctcttgtccacatctcataccttgagatgggccat
gacatcacacgactcttctattccaacatccagactgttgtcaacaactggctgcttatt
gagggccactctattggtattggagactccattgccgataaggcgacatatcaggacatt
cagaacacgattaagaaagccaaacaggatgtgatagaggtcattgagaaagcccacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcatcttgaacgatgctcgagacaagactggatcctctgcccagaagtcattgtctgag
tacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatccccttcggtttc
aagcaccgcactctccctcacttcattaaggatgactatggtccagagagtagaggcttc
gtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctgttatggtaaagtatgatgctacagtcagaaactcc
ataaaccaagttgtccagctgaggtatggagaggatggtctggcaggagaggctgtcgag
ttccaaaacatggctaccctcaagccatccaacaaagcctttgagaagaagttcaaattt
gactacaccaatgaccgagctctccgccgcactctacaggaagatgtggtgaaagatgtg
atgaccaatgcccatgtccagagttctctagagagagagtttgagaagatgaaggaagac
cgagagatcttgagggctattttccccacaggagacagcaaggtggtactaccgtgcaat
ttggccagaatgatctggaatgctcagaagattttccgcatcaatcctcgaacaccaact
gacctcaacccagtacgagtagtggaaggagtttatgacttgagtaagaagctggtaatt
gtaaatggtgaagaccagttaagcaggcaagctcaggagaatgccactctgctcttcaac
atccacctgcgctccaccctgtgctccaagcgaatgactgaggagttccgtcttagtaca
gaggcttttgaatggctgctgggagaaatagagaccaaatttaaccagtccattgctcac
cctggtgagatggtaggtgctctggctgcccagtctctggagagcctgggagagcctgct
actcagatgaccctgaatacattccactacgccggtgtgtccgccaaaaatgtcactctc
ggtgtgcctcgactcaaagagcttatcaacatctccaagcgacccaagaccccctccttg
accgtctttctcctgggccaagcggcccgtgatgcagagagggccaaagatatcctgtgt
cggttggagcacacaaccctgcgcaaagtcactgccaacacagccatttattatgacccc
aaccctcagaacactgtggtgactgaggatcaggagtgggtcaacgtgtattatgagatg
cctgacttcgacgtgacccgcatttcaccctggctgctgcgtatcgaacttgaccgcaaa
cacatgactgaccgtaaactgactatggagcagattgcagagaagatcaattcaggattt
ggtgatgacctcaactgcatcttcaatgatgacaatgctgagaaactggttttgcgaatc
cgcatcatgaacagtgatgagaacaagtttcaagaggatgaggaggtagtggataagatg
gatgacgatgtcttccttcgctgcatcgaatcgaacatgctgacagatatgacactgcaa
ggcattgaacagatcagcaaggtgtacatgcatctaccacagactgacaacaagaagaaa
atcatcattacagaagagggagagtttaaagccttgcaagagtggatcctggaaacggat
ggagtcagtcttatgagggtcctcagtgagaaggacgtggaccctgtcagaaccacctcc
aatgacattgtggagattttcactgttcttggtattgaggctgtgcgtaaggctcttgaa
agagagttgtaccacgtcatctctttcgacggttcttacgttaactaccgccatcttgcc
ttgctttgtgacacgatgacctgcaggggtcacttgatggcaatcactcgtcacggtatc
aacaggcaggacactggtccgctgatgaagtgctcttttgaagagacggtggatgtgttg
atggaagcctcatctcatggtgaatgtgacccaatgaaaggagtgtctgagaatatcatg
ctgggacagctggcgcctgcaggcactggttgctttgacctgctgttggatgctgagaag
tgcaagtatggcatggagattcccaccaatatccctggtatcagtgtcgcaggacccacg
ggtatgttctttggctctgcccccagccccatgagtggcatgtctcctgccatgactccc
tggaacacaggagccactcctgcatacggtgcctggtctcccagtgttggaagcggaatg
acaccaggtgctgcaggcttctctcccagcgctgcatctgatgccagcggcttctcgcct
ggctattctcctgcctggtctcctactcctggttctcctggatcccctggaccagctagc
ccttatatcccctcaccaggagccttgtctccgaattactctccaacttctcctgcctac
gagcctcgttctcctggtggatacaccccgcagagccctggttactctccgacttctcca
tcatactctccgacttcgccatcttattctcccaccagtccgaactacagccccacatct
ccgtcctactcgcccacatcaccctcctactctccgacttcgccatcttattctccaaca
tctccaagctactctccgacttcaccgtcttactctccgacttcaccgtcttactccccg
acttcaccgtcttactcgccaacatcccccagctatagcccaacgtcccccagctacagc
ccaacctcaccgagttacagtcccacgtctccatcttattccccaacttctccatcttat
tccccgacctccccgtcttactctcccacctctccaagctactctccaacctccccatct
tattcgccaacatctccgagctacagtcccacttcgcccaactacacgcccacctcgcca
agttactctccaacctctccatcttacagcccaacctcaccttcctactctcccacgtct
cccaattacaccccaaccagtccgaattattcccccacatctccttcttactccccaact
tcgccgtcctactctccatccagtccacgttacaccccacagtctcccacttacacccct
agctcaccctcttacagcccaagctctccatcctactcccccacatctccaaaatacact
cccacctccccttcctacagtcccagctctcccgaatataccccaacatcccccaaatat
tcccccacttccccgaagtactcgcccacttcgcccaaatacagtcccacttctccaacc
tactccccaactacgcccaagtacagccccacttcccctacttattctccaacttctcct
acctacaccccaaccagccccaaatattcccccacctctccgacttactctccaacttct
cccaaatactcacccacatcccctacctactctccaactagtccgaagggctccacctac
agccccacttctcccggctacagccccacctctccaacctacagcccagccatcagccct
gacgacagcgatgaagaaaataattaa
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integrated database retrieval system
