Cyprinus carpio (common carp): 109056107
Help
Entry
109056107 CDS
T05134
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03030
DNA replication
ccar03420
Nucleotide excision repair
ccar03430
Mismatch repair
ccar03440
Homologous recombination
ccar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109056107
03420 Nucleotide excision repair
109056107
03430 Mismatch repair
109056107
03440 Homologous recombination
109056107
03460 Fanconi anemia pathway
109056107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109056107
03032 DNA replication proteins [BR:
ccar03032
]
109056107
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109056107
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109056107
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109056107
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109056107
MMR (mismatch excision repair)
109056107
DSBR (double strand breaks repair)
HR (homologous recombination)
109056107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
109056107
NCBI-ProteinID:
XP_042595533
Ensembl:
ENSCCRG00000016294
UniProt:
A0A9Q9X5C1
LinkDB
All DBs
Position
B15:complement(18340556..18364927)
Genome browser
AA seq
604 aa
AA seq
DB search
MTVRLSEGAIESLTKGIEVSNPVLQCVNIRKIDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLASNCVCMLKRSVTNVLKDGRRVVVILDMDVIKSADQMAGKIGDPTPYVEG
ESQSNPQQNAAPAPVRPQNGSDVSLGTMNRPSAQSFGKKPMAAPNTPGGSSKVVPIASLN
PYQSKWTVRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNNEVDKFFSLIEQ
GKVYYISKGTLKIANKQFCTLKNDYEMTLNGETTISPCEDSHDVPMVQCDFVSIADLESR
EKDAIVDVIGVCKNTEDVTRIMTKNSREVSKRNIQLMDMSGRIIQLTMWGSDAETFDGSG
QPVLAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHAMDGQSMTELRG
PGGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVD
QQNGMYRCEKCDKEFPDFKYRLMISANIADFGDNQWVTCFQDSAETLLGQNAGYLGQLKD
SNEPAFDEVFQHANFNTFVFRNRAKLETYNDESRIKVTVVDVKPVDHREYSKRLIINIRK
LAAQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactgttcgactgtcagaaggggcgattgagtccctgacaaaaggaattgaagtcagc
aaccctgttctgcagtgtgtgaacattcgtaagatcgatgggggaaatggcctgtcccgg
ttccgtctcatgatgagtgatgggctacacaccatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaaaaccagttggcctctaactgtgtgtgtatgctgaaaaga
agcgtcactaatgttctcaaagatggacgacgtgtggtagttatactggacatggacgtg
atcaagtctgctgaccagatggcaggaaaaattggagacccaactccttatgtggagggt
gagagccagtcaaacccacaacagaatgcagctccggctcctgtacgtcctcagaatgga
agtgatgtctcattaggtacaatgaacagaccttctgctcagagctttgggaaaaagccc
atggctgcccccaacactcctggaggcagctctaaagtcgttcccattgccagcctcaat
ccataccagtcaaaatggactgttagagccagagtcaccaacaagagtgccatccgcacg
tggagtaactccagaggggatgggaagctcttctccatggagcttgtggatgaaagcggg
gagatcagagcaactggatttaataacgaggtggacaaattcttctcactcatcgagcag
ggaaaggtctactacatctcaaaaggcaccctgaaaattgccaacaaacaattctgtacg
cttaagaatgactatgagatgactttaaacggtgagacaaccatcagcccttgtgaggac
agccatgacgtacccatggtgcagtgcgactttgtttccattgctgatctggagtcccgg
gagaaagacgccatcgtagatgtgattggagtgtgtaaaaacacagaggatgtgacgcgc
atcatgaccaagaacagtcgtgaagtttcgaagaggaacatccaactgatggacatgtcc
ggcagaatcatccagctaaccatgtggggtagtgatgcagagacgtttgatggcagtggg
cagcctgtcttggccattaagggagcaagattgtctgactttggtgggcgttctctctcc
actctctacagcagcacggtcatgatcaaccctgacattcccgaggcatacaaactgcgg
ggatggtatgataaggaaggacatgctatggatggacagtcgatgactgagttgagagga
cctggtggtggtggtggaaacacaaactggaagaccctggcggaagtcaagaatgagcac
ttaggacatggagacaaagctgattatttctcttgcatcgccaccatagtctacatccgt
aaagagaactgcttgtatcaggcctgtcccagcaaagactgcaacaagaaggtggtggac
cagcagaatggcatgtaccgctgtgagaaatgcgacaaagagttccctgacttcaaatat
cgtctcatgatctcggccaacattgctgattttggagacaaccaatgggtgacttgcttt
caggacagtgctgagaccctcctgggccaaaacgcaggttatctcggccaactcaaggac
tcaaacgaacctgcatttgatgaggtctttcagcatgcaaacttcaatacttttgtcttc
cggaaccgagcgaagctggagacctacaatgacgaatcacgcattaaagtgacagtggtg
gacgtcaagccagtggaccacagagaatacagcaaacggctgatcatcaacataaggaag
ttggctgcacagtag
DBGET
integrated database retrieval system
