Cyprinus carpio (common carp): 109056121
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Entry
109056121 CDS
T05134
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03030
DNA replication
ccar03420
Nucleotide excision repair
ccar03430
Mismatch repair
ccar03440
Homologous recombination
ccar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109056121
03420 Nucleotide excision repair
109056121
03430 Mismatch repair
109056121
03440 Homologous recombination
109056121
03460 Fanconi anemia pathway
109056121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109056121
03032 DNA replication proteins [BR:
ccar03032
]
109056121
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109056121
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109056121
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109056121
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109056121
MMR (mismatch excision repair)
109056121
DSBR (double strand breaks repair)
HR (homologous recombination)
109056121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
109056121
NCBI-ProteinID:
XP_042627175
Ensembl:
ENSCCRG00000018798
UniProt:
A0A8C1PCZ2
LinkDB
All DBs
Position
A15:complement(16673452..16693285)
Genome browser
AA seq
603 aa
AA seq
DB search
MTVRLSEGAIESLTKGTEVSNPVLQCVNIRKIDGGNGLSRFRVMMSDGLHTMSSFMLSTQ
LNPMAEQDQLAANCVCILKRSVTNVLKDGRRVIVILDMEVIKSADQMAGKIGDPTPYVEG
QSKQQQSTAPAPTVRPLQPQNGSDGSMNRPSAQSFGKKPMAAPNTPGGSSKIVPIASLNP
YQSKWTVRARVTNKSAIRTWSNSKGDGKLFSMELVDESGEIRATGFNHEVDKFYSLIEQG
KVYYISKGSLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPKVQCDFVSIADLETRE
KDTIVDVIAVCKNTEDVTRIMTKNSREVSKRNIQLMDMSGKVIQLTMWGNDAETFDGSGQ
PILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHAIDGQSMTELRGP
GGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACSSKDCNKKVVDQ
QNGMYRCEKCDKEFPDFKYRLMLSANVADFGDNQWVTCFQDSAETLLGQNAGYLGQLKDS
NEAAFDEVFQHANFNTFVFRNRVKMETYNDESRIKVTVVDVKPVDHREYSKRLIINIRKL
AAQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttcgattgtcagaaggggcaattgagtccctgacaaaaggaaccgaagtcagc
aaccctgttctgcagtgtgtgaacattcgcaagattgatgggggaaatggcctgtcccgt
ttccgtgtcatgatgagtgatgggctgcacactatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaagaccagctggccgctaactgtgtgtgtattctgaaaaga
agcgtcactaatgttctcaaagatggacgacgtgtgatagttatactggatatggaggtg
atcaagtctgctgaccagatggcaggaaaaattggagacccaactccttatgtggagggc
cagtcaaagcaacagcagagtacagcgccggctccaactgtacgtccattacagcctcag
aatggaagtgatggttcaatgaacagaccctctgctcagagcttcgggaaaaagcccatg
gctgcccccaacactcctggaggcagctctaaaattgtgcccattgccagcctcaatcca
taccagtcaaaatggactgttagagccagagtcaccaataagagtgccatccgcacatgg
agtaactccaaaggggatgggaagctcttctccatggagcttgtggatgaaagcggggag
attagagcaactggatttaatcacgaggtggacaaattctactccctcattgagcaggga
aaagtctactacatctctaaaggctccctgaagattgccaacaaacaattctcttcactt
aagaatgactatgaaatgactctaaatggcgagacaagcatcatcccttgtgaggacagc
catgatgtccccaaggtgcagtgcgactttgtttccattgctgacctggagacccgggag
aaagacaccatcgtagatgtgattgcagtgtgtaaaaacacagaggatgtgacgcgcatc
atgaccaagaacagccgtgaggtttcaaagaggaacatccaactgatggacatgtccggc
aaagtcatccagctcaccatgtggggtaacgatgcagagacgtttgatggcagtgggcag
cctatcttggccattaagggagcaagattgtctgacttcggtgggcgttctctctccact
ctctacagcagcacggtcatgatcaaccctgacattcctgaggcatacaaactgcgggga
tggtatgataaggaaggacatgctatagatggacagtcgatgaccgagttaagaggacct
ggtggtggtggtggaaacacaaactggaagaccctggcggaagtcaagaatgagcacttg
ggacatggagacaaagctgattatttctcttgcatcgccaccatagtctacatccgtaaa
gagaactgcttgtatcaggcctgttccagtaaagactgcaacaagaaggtggtggaccag
cagaatggcatgtaccgctgtgagaaatgcgacaaagagttccccgacttcaaataccgt
ctcatgctctcggccaacgttgctgattttggggacaaccaatgggtgacttgcttccag
gacagtgcagagaccctcctgggccaaaacgcaggttatctcggccaactcaaggactca
aacgaagctgcatttgatgaggtctttcagcatgcaaacttcaatacttttgtcttccgg
aaccgagtgaagatggagacctacaatgatgaatctcgcatcaaagtgacagtggtggac
gtcaagccagttgaccaccgagaatacagcaaacgcctgatcatcaacataaggaagttg
gctgcacagtag
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integrated database retrieval system
