Cyprinus carpio (common carp): 109056490
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Entry
109056490 CDS
T05134
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1-like
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccar01009
]
109056490
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109056490
Protein phosphatases and associated proteins [BR:
ccar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109056490
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
109056490
mRNA cycle factors
Stress granule specific factors
109056490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Staufen_C
dsrm
DEC-1_N
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
109056490
NCBI-ProteinID:
XP_042581102
Ensembl:
ENSCCRG00000052023
UniProt:
A0A9Q9WCX9
LinkDB
All DBs
Position
B6:24320828..24332282
Genome browser
AA seq
714 aa
AA seq
DB search
MSQLQFQVPGNPAPSAAPLQLAPPQPGFSIPCGAAPLPSESASHPLRNSALPSASATPFC
NPTVSNMANPKEKTPMCLVNELARYNKIQPEYKLLSEQGPAHSKIFSVRLTLGDQHWDAE
GTSIKKAQHSAATCALAQSTLPKPSHRSPRHPGKNPGGIYKGLEYNVTHTVELNALCMKL
GKKPIYKPIDAYQGMRPAFNYNIRAPSPYARSMQHYYYPFPPVGPVLYHMELSIGGQQFH
GKGRTRQAAKHDAAAKAIKYLQKEPIMQQLAEMDEEPVQENLNKSEISQVFEIALKRNMP
VNFEVLKETGPPHMKSFVVRVTVGEFSGEGEGKSKKIAKKLAAIAVLEELRKLPQLPVTD
KIPLRIKKKSKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREF
VMQVSVGGQNAEGMGPSKKVAKRNAAEKMLELLGFKVPQPQPPKPALKTDEKAPAKKPVI
KVNLPYPSPAQKTNSLECCHMQLIHVFLKAVNKEENFRVPFLSHQQLPAGILPMVPEVAQ
AVGANQGPHARDYGRTAAPNPAKATVTAMIANELLYAGTSPTAEGILKTNNSLAHRPHGP
LTRPSEQLSYLATVQGLQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMA
ALNILKLLSELDQQSNERTANGPMTGCNKQDLEGDALLKPANPSTIRKTLDGTV
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcttcagttccaggtgcctggcaaccctgcacccagtgccgcccctttacag
ctggccccgccccaacccgggttcagcattccctgcggcgccgctcctttaccctcagag
agtgccagtcacccgctccgaaactccgccttgccttctgcctctgccacgcccttctgc
aaccccacagtatctaacatggcaaaccctaaagagaagacccctatgtgtttggtaaat
gagttagcccgttacaataagatccaacctgaatacaagctactcagtgaacaaggacca
gcccactccaagattttctcagtgcggttaactctgggggatcagcactgggatgcagag
gggaccagtatcaaaaaagctcagcactcagcagcaacatgtgctctcgcccaaagcact
ctccccaaacccagtcacagaagcccccgccacccaggcaagaacccaggtgggatctac
aagggcttagagtataatgtaacccacactgtggagcttaatgcactttgtatgaagttg
ggcaagaagcccatctacaaacctatagatgcctaccaggggatgagaccagcattcaac
tacaacatcagagcaccaagcccttatgcacgctccatgcagcattattactatccattt
cctcctgtggggccagtactgtatcatatggagctgtctatcggtggacaacaattccac
ggcaagggccgcacgcgtcaagcagccaaacatgacgctgcggctaaagctatcaaatat
ctgcagaaagagccaataatgcagcagctagctgagatggacgaagagccagtacaagaa
aaccttaacaaatcagagatcagccaagtgtttgagattgcactgaagcgcaacatgcct
gtgaatttcgaggtgctaaaagagactgggcctccccacatgaagagttttgtggtgagg
gtaactgtgggcgagttttcaggggaaggtgaaggcaaaagcaagaagattgccaagaaa
ctagctgccatcgctgtcctagaggagctccgcaaactgcctcaactacctgtcactgac
aagataccactacgtattaaaaagaaaagcaagtccattattaagctgcagaccagccct
gagtacggtcagggcatgaaccccatcagcagactggctcagatccagcaggctaagaaa
gaaaaagagcctgagtacacattagtgacagagagaggactgcctcgacgcagggagttt
gtcatgcaggtgtcagttggaggtcagaatgcagagggaatgggacctagtaaaaaagtg
gccaagagaaatgcagccgagaagatgctggagcttctgggctttaaagtgcctcagcca
caaccacccaaaccggcgctgaaaacagacgagaaggcacctgctaagaaacctgtaatt
aaagtaaacttaccttatccgagccctgctcagaagacaaattcacttgaatgttgtcat
atgcaattgattcatgtgtttctcaaagcagtcaataaggaggagaatttcagagttccc
ttcctcagccatcagcagcttcctgctggcattttacccatggtgcctgaggtggcacag
gcagtgggtgccaaccagggaccccatgccagagactacggtcgcacagctgcccccaac
ccagccaaggccacagtaacggcgatgattgccaatgagctgctgtacgctgggacgtcc
ccaacagcagagggtatactgaagaccaacaacagcttggcacacagaccccacggaccc
cttaccagaccatcagaacagctcagctacctggccactgtacagggcttacaggttgaa
tacaaagactttcccaaaaacaacaagaatgagtttgtgtctctgatcaactgttcctct
cagccccctctcatcagccacggcatcggcaaggacgtggagtcctgccatgacatggct
gctctgaacatcctgaagcttctgtcagaacttgaccagcagtccaatgagcgcacagct
aatggaccaatgacagggtgcaacaaacaagacctcgagggtgatgcattattaaaaccg
gctaacccaagcactatcagaaagactctggacggcacagtatag
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