KEGG   Cyprinus carpio (common carp): 109057673
Entry
109057673         CDS       T05134                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109057673 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109057673 (exosc1)
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109057673 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     109057673 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N S1_RRP4
Other DBs
NCBI-GeneID: 109057673
NCBI-ProteinID: XP_018930449
Ensembl: ENSCCRG00000024520
UniProt: A0A8C1ZM04
LinkDB
Position
A1:complement(33710413..33715283)
AA seq 194 aa
MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLTGYVLRKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgaaaggctctgcagcacggaggactgtatc
cctggtaccggcacgtatctgcggcacggctacatcttcgcttcactcacgggatacgtg
ctgagaaagaacgagggagaggagctcccggtgatttcggtcgttagggagacagaaaca
caacttttgcctgacgtgggtgccatcgtcacctgtaaggtgacgagtatcaacccacga
tttgctaaagtccacatcttatatgtcggttcgaccccactaaaagaccggtttagaggc
actatcagaaaagaagacgtgagagcgacagaaaaagataaggtggagacgtacaaaagc
ttcaggccaggcgacattgtccttgcaaaagttatctctttgggcgacgtgcagtcgaac
tacctgctgaccacagcggagaacgagctgggtgtagtcgtggcccacagcgaggcgggg
gctcagatggtgcccatcagctggtgtgagatgcagtgtccacgcacacacgccaaagag
tttcgcaaggtggcgcgggtacagccggagtacctgcaggcctga

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