Cyprinus carpio (common carp): 109057821
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Entry
109057821 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: RB1-inducible coiled-coil protein 1-like
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109057821
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccar01009
]
109057821
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109057821
03029 Mitochondrial biogenesis [BR:
ccar03029
]
109057821
Protein phosphatases and associated proteins [BR:
ccar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109057821
Membrane trafficking [BR:
ccar04131
]
Autophagy
Autophagosome formation proteins
ULK complex
109057821
Mitochondrial biogenesis [BR:
ccar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
109057821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
109057821
NCBI-ProteinID:
XP_018930595
Ensembl:
ENSCCRG00000016336
UniProt:
A0A9Q9ZCX6
LinkDB
All DBs
Position
B24:19878158..19898563
Genome browser
AA seq
1618 aa
AA seq
DB search
MKLYVFQVNNGCTLTFDTELAVQTVLDLKHAIQAKYKIAVQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILSDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCLFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDTAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLESLTRQSYRESLEKSSSPHPRTTDEDENEDEEVGE
TSTQSAISHKNRKSPSPVSASGEASSQASFSPQDRLKSSCSLKAALEEEEESPERGAAPS
FNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRETITKLDNQNMKAIK
GLEDRLYALDQMIASCKRLVNEQQELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIM
LTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERV
RVVEALSTVPQMYCLAVVEVVRRKMFIGHYRQWANALVKDGKNLYEAEKVKRECFGKLFR
KSFLRNRLFRGLEXWGLFYFXTRKPRKFDFELPDISLSDLQYLKSCCPSEVQPYLRVPTL
CDFEPLNQHVEVLHQLVQAAQSVDEMSQTITDLLNEQKFYCSQSAQRSTAFTPRSESTTE
IISTSTKTLSNLSLKAPDCQPLALPGNLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGSL
DLDSLAESPESDFMSAVNEFVIEQNLMSPNPISDPTSPDMMVESLYSSVINAIDSKRIQD
TTTLEKENSKIAVLKLSADRYRSAAEESQNNLRKVKEDLYHFRGLVLKEQRDFGFSLKTM
TIEVRNALNSVRYCHEEELRETQQTDLQSLKDDHEKQIQTLTEELEGNRKIVRDVQRAVL
ELEGLVERKEKEISQLESERERSMQELQDLHKQTVPDLEEKILKQSEELKATLLSKDELA
GQLENLHFEIEHGQQKIRQEMEKAEKVHHQELEARLTQQHEAELESLRLEKESALDKLVQ
ENLVKLKDLVDSYSAEIKEREGRLKDLEARITELADARCKLEVEMALKETEMDEMRLQYE
EAKSTQEEVLRAELTTQTVTLQTQIDMLNQQVQQKNEDYEVGLAELRALMRLEKDHCISE
LVDRHEEENTLLRQESAALKQKSQDAEKDCEERVQKIQRDHQDQFDALQREKEDEQRAFQ
EKEQELKNVIGDLQTENSLLSGRLERERVEALQRAEKEKEEAVKAALQEALRDFQLQKEE
TETRLLGQIELLENQLKDRQSTDIVGPAVEKTETAMGTSAAFSLESGQWTEERASLLAQL
ELLERTKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLKNLTQQQEKDKG
LIETLSEDRASILQEKKQMEEELNRLRSTVLVSSSFFPPNPIPVVTEAHGACGPAHVEVL
SPSTPDPERLASVAVFKDEERVESAVEASMMTVHDNPMLSEEKQRILILERTLHMKEEEN
KRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSE
SLTALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaagtcaacaacggatgcacattgacatttgacactgaactt
gcagtccaaaccgttttggaccttaaacatgccattcaggccaaatataaaattgctgtc
cagcaccaggtgctggtggtcaatggaggggagtgtatggtggcagagaggcgcgtgtgc
agctacagtgctggaacggacaccaacccgatcttcttattcaacaaagagatgatcctg
tctgaccgagctccaaccatccccaaaacgaccttctccatagagaatgagatggagctg
aaggtggaggagtcactcatgatgcctgccgtctttcacaccgtcgcttcccgcactcag
ctggctgtggaaatgtttgaggttgccaagaagctttgcttgttctgtgagcgtctggtc
catgacgaacaccttcagcaccagggatgggcggccatcatggctaacctggacgattgc
accctatcctatcaaaaactcctcatgaaattcgacactgcttatacaaattaccaacag
gattttgaagacatcaaattaaaactcacaaagcttggcactgctgtctcagtcatggcg
aagattccactgctggagagtttgactcggcagagctacagagaaagcttggagaagtcc
agctcccctcacccgagaaccacagatgaagatgagaatgaggatgaagaagtaggagaa
acatccacccagtccgctatcagccataagaatcgaaagtcaccctcgccggtctctgct
tcaggggaagcgtcgtcccaggcgtccttctctcctcaggacagactgaagagcagctgt
agtctaaaagcagctctagaggaagaggaggagtctccggagaggggagccgcaccctct
ttcaatgtcacgctcttggattggatcaacgttcaggacagacctaacgatgtggagtca
gtagtgaggaaatgttttgactcaatcaacaggctcgacccacgaattatccaacccttt
ctatctgaatgccgcgagacgattaccaaattggataatcagaacatgaaggccatcaaa
ggtcttgaagacagattgtatgctcttgaccaaatgatagcaagctgtaaacggctggtc
aatgaacagcaggaacttgctcagggatttcttgccaatcagaagagggctgaaaacctg
aaggacacctcggtgctgcctgacctgtgtctgagtcacgctaaccagctaatgatcatg
ctgaccaatcacaggaagctgctagacatcaagcagaagtgtaccactgccaaacaggag
ctcgccaacaaccttcaagttcgtctcaaatggtgctgctacgtgatgcttcacgctgat
caggatggagagaagctgcaagctctcctgaggctgctgacggagctgctggagcgtgtg
cgggtggtggaggcgctcagcactgtgccacagatgtactgtctcgccgtagtggaggtg
gtcagacgcaaaatgttcataggacactacagacaatgggccaatgctcttgtcaaagat
gggaaaaacctctatgaggcagaaaaagtaaaaagggaatgctttgggaagctcttcagg
aaatcgttcctcagaaaccggttgtttcgaggactggagtgatgggggttgttttatttt
tgaacccgaaagcctcgaaagtttgactttgagcttccagatatttccctgagtgacctg
cagtatctcaagtcctgttgtccttccgaggttcagccttacctcagggtccccacacta
tgtgactttgagcctcttaaccagcatgttgaggttcttcatcagctggttcaggctgcg
cagagtgtggacgagatgtcacaaactatcacagacctactaaatgaacaaaagttttac
tgtagccagagtgctcaaagatccaccgcatttacacccagatctgaaagcacaactgaa
atcatctctacctccaccaaaactttgtccaatctcagtttaaaagcaccggactgccaa
cccctggcgcttcctggtaacttggaggacctgtcacctgacagcatagatgctcagacc
tttgactttgaaaccattgggcatcccaatatggatcctgtattacagcaaggctcgttg
gacttggactcgttagcagaaagtcctgagtcggatttcatgtcagcagttaatgagttt
gttattgagcagaacttgatgtcacctaatcccataagtgatcccacaagccccgatatg
atggtggagtctctttactcctctgtcattaatgcaatcgacagcaagcgtatacaggac
actactacacttgagaaggaaaattcaaagattgcagtactcaagctgtcagcagacagg
taccgttctgctgcagaagagtcccagaacaatttgaggaaagttaaagaagacctttat
cactttcgaggtcttgttctgaaagagcagagagactttggattctccctgaaaacaatg
accattgaggtccgaaatgctctcaacagtgtcagatactgtcacgaggaggagctgaga
gaaacgcaacaaaccgatctccagagtttgaaggacgatcatgaaaagcagattcaaact
ctcacggaagagcttgaaggcaatcggaagattgttcgagacgtccagagagcagtgcta
gaattggaggggctcgtggagcgcaaggagaaggaaatatcccagctggagagtgagagg
gaacgctctatgcaagaacttcaagatcttcacaagcaaactgtgccggaccttgaggag
aagatcttgaagcaaagtgaagaactgaaagctacattgctgtccaaggacgaactcgct
gggcagctggagaaccttcactttgagatcgagcacggccaacagaaaatcaggcaggag
atggagaaggcagagaaggtgcaccatcaggaactggaggcacggttgacacaacaacac
gaagcagagctggaatctctcagattggaaaaagaaagtgcacttgacaaactcgtccag
gagaacctggtgaagctaaaagatctggtggattcctattctgctgaaatcaaggagcgc
gagggacgcttgaaagacttggaggctcgcattacagaacttgcagacgcccgctgcaaa
ctggaagtggagatggctcttaaagagaccgaaatggatgaaatgagactccagtacgag
gaggccaaaagcacccaagaggaggtgttgagagcggagcttactacccaaacagtcacc
ttgcagacgcaaatcgacatgttaaatcagcaggtccagcagaagaacgaagactatgag
gtgggcctggccgagctccgagcgctcatgaggttagagaaagaccactgcatctctgaa
ctcgtggatcggcacgaagaggagaacaccctgctccgccaagagtctgcagcactcaag
cagaagtcccaggatgcagagaaagactgtgaggaacgagtccagaagatccagcgtgat
caccaggaccagtttgatgccttacagagggaaaaggaggatgagcagagggctttccag
gagaaagagcaagagctaaaaaatgttatcggagacctgcagacagaaaactcactacta
tcggggagactggagcgggagagggtggaggccctgcagagggcggagaaggagaaagag
gaggcggtcaaagctgcattacaagaggccttaagagactttcaactccaaaaagaggag
actgagacaagactgttaggacaaattgagctacttgaaaatcagctcaaagacagacaa
tccactgacatagtgggacctgctgtagaaaagacagagactgctatgggaaccagtgct
gcattttcactggagagtggccagtggaccgaggaaagggcatcgctcctggcccaacta
gagctcctggaacgaacaaagaacgaggagatgcagaacctgaagacctcgctcattgct
gagcagcagacaaacttcaatactgttctgacccgggagaaactaaagaaagaacaaatc
atcaatgatctcactgagaagctcaaaaacttgacacagcaacaagagaaagataaaggc
ctgatcgaaacgctctctgaggaccgtgcctccatccttcaggagaagaagcagatggag
gaagaactgaaccgtctgcggagcaccgtcctcgtctcttcgtccttctttccgcccaat
cccatcccggtcgtcacggaagctcacggcgcctgtggccccgcccatgtggaagtcctc
tcgccgtccacccctgatccagagagactggcgtccgtagctgtgttcaaggacgaggag
agggtggagtcagccgtggaggccagcatgatgacagtgcatgacaaccctatgctgtct
gaagagaaacagcgcatactgattttggaaaggactttacacatgaaggaggaagagaac
aaacgacttagtcaaagattgatgtcccagagtatgtcgtccgtctcgtcacggcactcg
gagaaaatcgccattcgagattttcaggtgggcgacttggttctcataattttggacgag
aggcacgataattacgttctcttcactgttggtcccaccctttatttcctgcactcagag
tccctaactgcactggacctcaaaccagcgacaggagcaacaagacggccgtgggttcta
ggaaaagtcatggagaaggaatattgccaagccaaaaaggcccaaaaccggttcaaagtt
cctctcggcactaaattctacagagtaaaggccgtgccatggaacaagaaagtgtag
DBGET
integrated database retrieval system
