Cyprinus carpio (common carp): 109058027
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Entry
109058027 CDS
T05134
Name
(RefSeq) nuclear receptor ROR-alpha B-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109058027
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ccar03310
]
109058027
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
109058027
Nuclear receptors [BR:
ccar03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
109058027
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
109058027
NCBI-ProteinID:
XP_042628204
UniProt:
A0A9Q9YXI0
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Position
A16:6551192..6589129
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AA seq
545 aa
AA seq
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MVSMQSLNQKLHRKHDLIRTFLSGNPVHKKSHLIVRDSFRHISRRMKRPRCLEPPKSELD
DAHHGGWEAQIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYSCSRQSNCPI
DRASRNRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHRQQQRLQANSVQEP
QPLPAYRTGKEPREQSPHLIPPLPPAYPYSVEPELQGCPPEVHPYLECRIGEAQAQSLAY
RGSHRRGESNSLSAGRGFDSTRSTPEAILNMSGSEIGFRPFDPESSFFSYPTSLHIEDIS
ASIIRSHRETTQYRPEQLQALRWKVFSREEIHAYQSKSVDEMWQHCAVRLTDAVQYVVEF
AKRIPGFRQLCQNDQIALLKSGSMEVVLVRMSRMFNTENNTVFFDGKFAGTELFKSLACG
DLLAAVFDFAHNLCVLRLTEQQIAVFTALVLLNADRPCLEDRERVQRVRRDVELALRHIL
HRDNQESLLHKLYQRVPVLKSLCALHIEKLRWFRQLYPLTVHSLFPPLYKELFGSDTDIL
TLTSH
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggtatcgatgcagtcgctcaaccagaaactccatcgcaagcacgacttgatcagaacg
tttctcagtggaaatccagtgcataagaaatcccatctaattgtacgcgactcattccgc
catattagcagaaggatgaaacgtccaaggtgtcttgaaccacctaagtcagagctggat
gatgcacatcatggaggatgggaagctcagattgaggtgatcccatgtaagatctgtgga
gacaagtcatcaggggttcattatggagttatcacttgtgagggctgcaagggcttcttc
cgcagaagtcagtcctccagcgtgcagtactcgtgctccagacagagcaactgccccatt
gaccgcgccagccgtaaccgctgccagagctgccgcctcaaaaaatgtgtcgctcaagga
atgagccgtgacgcggtgaagtttggtcgtatgtctaaacgtcagagagactcgctattt
gcagaagtcgagagacatcggcagcagcagcgtcttcaggccaactcagtccaagagccc
cagcctctcccagcctaccgcactggcaaagagcccagagaacagtcaccacatctcatc
ccacctctacctccagcttacccttattctgtagagcctgaactgcaagggtgccctcca
gaggtgcatccatacctggagtgtcgcataggcgaggcccaggctcagagtctggcctac
aggggctcccacagaagaggtgagagcaacagcttgtcagctgggcgaggatttgactcc
acaaggtctacaccagaggctattctgaacatgagcggcagtgaaatagggtttcgtcct
tttgaccctgagagctcgttcttttcttacccgacatctctgcacatagaggacatctct
gcaagtatcatacgttctcacagagagacgactcagtatcggccggaacagctgcaggct
ctcagatggaaggttttcagcagggaggagatccacgcttaccagagcaaatcggtggat
gagatgtggcagcactgtgcggtgcggttgaccgatgctgttcagtacgtggtggaattt
gctaaacgtatcccaggattccgtcagctttgtcagaatgatcaaattgctctcctcaag
agtgggtccatggaagtggttctggttcggatgagtcggatgtttaacacagaaaacaac
acagtattctttgacggcaaatttgcaggaacagaacttttcaaatccctcgcatgcggt
gatctactagctgctgtattcgactttgctcacaatctgtgtgtgctgagactgactgaa
cagcagatagcagtgttcactgcgctggtcctcctcaatgcagatcgaccgtgtctggaa
gacagagagcgagtgcagagagtaaggagagatgtggagcttgcccttcgtcacattctg
cacagagacaatcaggagagtctactgcataagctgtatcaaagagtcccagtgctgaag
tctctgtgtgcgctgcatattgagaaactgcgatggttccggcagctttaccctctcacg
gtgcattccctcttccctccgctatacaaagagctgtttggctctgacacagatatactg
acactgacttcccattga
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