Cyprinus carpio (common carp): 109058217
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Entry
109058217 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109058217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109058217
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109058217
Spliceosome [BR:
ccar03041
]
Complex C
Other components
Step II factors
109058217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
S1
AAA_19
nSTAND3
AAA_16
T2SSE
TsaE
PhoH
ABC_tran
GIPC1_GH2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
109058217
NCBI-ProteinID:
XP_042624217
Ensembl:
ENSCCRG00000023168
UniProt:
A0A9R0B6R3
LinkDB
All DBs
Position
A12:complement(14720611..14740258)
Genome browser
AA seq
1147 aa
AA seq
DB search
MANIVEDELKNLEYLSLVSKVCTELDNHLVINDKDLAEFVISLAEKHPTIDEFKSVLVKK
WSRFHSKIFKISSLSRICSFNFMCCDFTFVPKNEKDKLKVLFPALCRPDNPNTRNMLDED
DVKVAGDAMKELEMFMPSVSGTEPSSSKYRSETSSSGKKKRRSRSRSRSRDRDRERDKDR
RRRHRSRSHSRSRSNERDRRKRRSRWHSRSRSRSPARGDRDKGSDRWKNKHVDRPPPEEP
SVGDIYNGKVTSIMQFGCFVQLEGLRYVFNTDVDQDTGEDLNPNRRRNVGGEGQEESAMW
NPDRPTNLNLGHAPEVEDDTLECKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGI
LPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKE
XREVKQAQREAEMDSIPMGLNKHWVXPLPDTDGRQIAANMRGIGMIPEWKKHAFGANKSS
YGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTT
RGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRE
CLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLXSATLDAVKFSQYFYE
APIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTVEEIDTACEI
LYERIKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIY
YVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQWAGRAGRTGPGKCYRLYTERAYRDEM
LTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMNAPPMETLIRAMEQLYTLGALDDEGL
LTCLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMMTIVSLSVQNVFYRPKDKQALADQKKA
KFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDV
VSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSTLFNRQPEWVVYHE
LVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRI
SRAFRRR
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatatcgttgaagacgagctcaaaaacctcgaatatttgtccttggtgtctaaa
gtttgtaccgaacttgacaaccacttagtaatcaacgataaggaccttgctgagtttgta
atcagtcttgctgagaaacatccaaccattgatgaattcaagtcagtgctggtaaaaaaa
tggagccgatttcacagtaagatttttaaaatctcatctctgtcaagaatttgttccttc
aattttatgtgttgtgattttacatttgtaccaaagaatgaaaaggacaagttgaaagtg
ctgtttccagctctgtgcagacctgacaatcctaatactaggaatatgctggatgaggat
gatgtgaaagttgcaggcgacgccatgaaagagttggagatgtttatgcctagtgttagt
ggtacagaacctagcagcagtaaatacagatctgaaaccagcagcagcggtaagaagaag
aggaggagcagaagccgcagtcggagcagagacagggatagggaaagagacaaagacaga
cggagacggcatcgctctcgctcccattccagatctcgctctaatgagagagacagaagg
aagcgcaggagccgctggcactctcgcagcaggtccaggagtcctgcacggggagacaga
gacaaaggctccgaccgctggaagaacaaacatgttgacaggcccccaccggaggagcca
tctgtgggggatatctacaacggcaaagtcaccagtattatgcagtttggctgctttgtg
cagttggaaggtctcaggtatgtttttaatacagatgttgaccaggacactggtgaagat
ctgaaccctaacagaaggagaaatgtgggtggagaaggtcaggaagagtcagccatgtgg
aatcctgacagacccactaacctcaacctgggccatgctccagaggtagaggatgacaca
ttggaatgcaaaagactcacaaagatatccgatccggaaaagtgggaaatcaaacagatg
attgctgccaatgtgttgtctaaggaggaattcccagactttgatgaagagaccggaatt
ctgcctaaagttgatgatgaggaggatgaagacttggagattgagctggtggaagaggaa
cctccattcctgagggggcacaccaaacagagcatggacatgagtcctgtcaagattgtc
aagaacccagatggatctctctcccaagcagccatgatgcagagtgccctggccaaagag
tgacgggaggtgaaacaggcccaaagggaagccgaaatggactcaatacccatgggcctt
aacaaacactgggtgngaccactgcctgacaccgacggcaggcagatagctgccaacatg
aggggcataggtatgatcccagaatggaagaaacacgcctttggtgccaacaagtcgtcc
tatggaaaaaagactcaactttctatcctagagcaaagagagagtcttcctatctacaag
ctgaaagagcagctcattcaggctgtccatgacaaccagatcctgattgtgatcggtgag
acgggctcagggaagaccactcagatcactcagtacctggctgaggctggatacaccaca
cgggggaagatcgggtgcacacaacccagaagagtggcagccatgtctgtggctaaaaga
gtgtcggaggagtacggttgttgtttaggtcaagaggttggctacaccatccgttttgag
gactgcacaagtcctgagactgtcattaagtacatgacggacggtatgctgttaagagag
tgtctgattgaccctgatctgggccagtatgcaatcattatgttggatgaggcccatgag
agaaccattcacacagacgtgctctttggcctgctcaagaagactgtacagaagcgaact
gacatgaagctcnnatctgctacgctggatgctgtgaaattctcacagtacttttatgaa
gcacctatttttactatccctggtcgtacatatccagtggaggttttgtacactaaagaa
cctgagactgactatctggatgccagtctgatcacagtcatgcagattcacctcactgag
cctccaggtgacgtcttggtgttcttgacagtggaggagattgacacagcatgtgagatc
ctgtatgaacgaattaaatccctcggtcctgatgtcccagagctgatcatcctcccagtg
tactctgccctgcccagtgaaatgcagaccaggatctttgacccagcaccacctggaagt
agaaaggtggttattgctactaacatcgcagagacatctttgacaattgatgggatctac
tatgtggtggatccaggttttgtcaaacagaaggtgtataactccaaaactgggattgat
cagctagtggttacccccatctcccaggcccaggctaagcagtgggcaggcagagcaggt
agaacaggccctgggaagtgctacagactctatacagaacgtgcctacagagatgagatg
ctcaccaccaacgtacctgagattcagagaactaacttggccagcactgtactgtctcta
aaggcaatgggcatcaatgaccttttgtcatttgatttcatgaatgctccgcccatggag
acgctcattagggccatggagcagctgtacactctaggagcattggatgatgaaggtttg
ctcacatgcctcggtcgtagaatggctgagtttcctctggagcccatgctttgtaagatg
ttgatcatgtccgtccatcttggctgtagtgaagagatgatgaccatagtgtcgctctcc
gtacagaatgtcttctatagaccaaaggacaaacaagctctggcagaccagaagaaggct
aagtttcaccagcctgagggggaccacctgactttgttggctgtctacaactcctggaag
aacaacaagttttccaacccctggtgctatgaaaacttcatccaggcgcgatctctcagg
cgtgcacaggatatccgcaaacagatgctgggcatcatggatagacacaagctggatgtg
gtatcatgcggtaaagccacagtacgtgtacagaaggccatctgcagtggtttcttccgg
aatgcagccaaaaaggaccctcaagaaggatacaggaccctcatagaccagcaggtggtc
tacatccacccctccagcacgttgttcaatcgccaaccagaatgggtggtgtatcatgag
cttgtgctgaccactaaagagtacatgagggaggtgaccactattgacccaaggtggctt
gtagaattttctccagctttcttcaaagtctctgatcccacacgcctcagcaagcagaag
aaacagcagcggttggagcccctctacaaccgttacgaggaaccaaatgcctggagaata
tcaagagccttcagacgacgctag
DBGET
integrated database retrieval system
