Cyprinus carpio (common carp): 109058461
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Entry
109058461 CDS
T05134
Symbol
col2a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109058461 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109058461 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109058461 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109058461 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
109058461
NCBI-ProteinID:
XP_042618960
UniProt:
A0A9Q9YEX7
LinkDB
All DBs
Position
A8:10541111..10561076
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AA seq
1466 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSIVRCQEEDDQEDFGGCIQDGQQYADRAVWKPEACRVCV
CDAGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGTRGEKGPKGEKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPSGPPGKPGSDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGANGESGAPGPMGPRGLPGERGRSGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEGGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGAP
GPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGLTGPK
GTTGDPGRSGEPGLPGARGLTGIDFFAVHHVIVGPTCVLGVVGVQGNLGYLGARGQPGVM
GFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGAAGPPGPAYFSVFVLGVPGGAGG
DGGNGGDGGVPGEGGAAGPTGPRGERGFPGERGGAGSQGLQGPRGLPGTPGTDGPKGAIG
PAGAAGAQGPPGLQGMPGERGAVGIPGAKGDRGXMGEKGPEGASGKDGARGLTGPIGPPG
PSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFAGPPGADGQPGIKGEQGESG
QKGEAGSHGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPGAAGRVGSPGPNGNPG
PAGPPGSAGKDGPKGVRGDAGLPGRPGDAGLRGPPGAPGEKGEAGVDGHPGPDGPVGPSG
LAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDRGPPGPVGPPGLSGPAGETG
REGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAPGSVGPIGKQGDRGENGPQG
PAGPPGPAGARGMVGPQGPRGDKGESGEAGERGQKGHRGFTGLQGLPGPPVSAPGDQGAA
GPAGPSGAKVTGKDGSNGQPGPIGPPGPRGRSGESGPIGPPGNPGPPGPPGPPGPGIDMS
AFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVDATLKTINSQIEDIRSPDGSRKNPAR
SCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCNMETGETCVKPSTPKIPRKNWWSSKS
KAQKHVWFGESMNGGFHFSYADSSHTPSTTSVQLNFLRLLSTEATQTITYHCKNSIAYMD
QATGNLKKAVLLQGSNDAEIRAEGNSRFTYGVLEDGCKKHTGQWAKTVIEYKTQKTSRLP
IVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatccattgtaagatgtcaagaagaagatgaccaggaagactttgggggctgcatccaa
gatggccagcagtatgcagaccgtgcagtatggaagccagaagcgtgccgcgtctgtgtg
tgtgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtccaatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacccccaggagagcagggaacacgtggcgag
aaaggacctaagggtgagaagggaggtcccggaccaagagggagagatggcgagcctggt
acacctggaaaccctggaccccctggaccaccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggcccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacccggccctgct
ggtccccttggaccccgtggcccttctgggccccctggaaaacctggaagtgatggtgag
gctggcaaacctggtaagtctggcgagcgtggacccccagggcctcagggagcccgtgga
ttccccggaacacctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggtgctaatggtgag
agcggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgttctggg
ccttctggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtccacct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcacaaggaccacgtggagagggtggt
acacctggatcacctggaccctccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgctcctggcatcgctggtgcccctggtttcccaggaccc
cgtggcccgccaggacctcagggagctactggacctcttgggccaaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcttggtgcccct
gggccatctggagaggaaggcaagagaggaccaagaggagagcctggttctgccggacct
cttggacctcctggagaaagaggagctccaggtaaccgtggattccctggtcaggatggt
ctagctggagcaaagggcgcacctggtgatcgtggtgttccaggtttgaccggcccgaaa
ggaacaactggagatcctggtcgctcaggcgagcctggtcttcctggagccagaggtctc
actggaatagatttttttgctgttcatcatgttatagttggaccaacttgtgtgcttggt
gtagttggagttcagggtaatcttgggtatctgggagctcgtggtcagcctggagtgatg
ggattccctggacctaagggagccaatggtgaacctggaaaacctggagagaaaggactt
gttggacgccctggtcttagaggtttgcctggtaaagatggagagactggagctgctggt
ccacctggccctgcttatttttctgtttttgttcttggtgttcctggtggtgctggagga
gatggtggtaatggtggtgatgggggtgttcctggagagggtggtgctgctggtcccact
ggaccaagaggtgaacgtggtttccctggtgagagaggaggtgctggctctcagggtctc
cagggaccaagaggacttccaggaactcccggtactgatggacctaagggtgcaattgga
ccagctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagaga
ggagctgttggaatccctggagctaaaggtgacagaggttgaatgggagagaaaggacct
gaaggtgcttctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggt
ccttctggtcccaatggcgcaaagggtgaaactggtcccattggctcaattggtgctcct
ggtgctcgtggtgcccctggtgatcgtggtgagattggtgcacccggacctgctggcttt
gctggacctcctggtgctgatggccagcctggaattaagggagagcagggtgagtcagga
cagaaaggtgaggctggatcccatggaccccaaggaccatcaggagcacccggcccagtg
ggtccaactggtgttacaggacctaagggagcacgtggagcccaaggagcccctggtgcc
actggtttcccaggtgctgcaggaagagttggatcacctggccccaatggtaatcctggt
cctgctggccccccaggttctgctggtaaagatggtcctaagggagttcgtggtgatgcc
ggtctcccaggcagaccaggagatgctggactgcgtggaccacctggtgctcctggagag
aagggagaggctggagtggatggtcatcctggtcctgatggtcctgttggcccttctggt
cttgctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttccca
ggacttccaggaccctctggtgagcctggtaaacagggagcttctggctcttctggtgac
cgtggacctcctggccctgttggacctcctggattaagtggacctgctggagagactgga
cgtgagggtaatcctggatctgacggtccacctggtagagatggtgctgctggtgtgaag
ggtgagcgtggtaacactggcccaatcggtgctcctggagctcctggtgcacctggtgct
cctggttccgttggtccaattggcaaacagggagacagaggagagaatggcccacaagga
cctgctggaccccctggacccgctggagctagaggcatggttggaccccaaggacctcgt
ggtgataagggtgagtcaggagaagctggagaaagaggtcagaagggacacagaggattc
accggtctgcagggtctgcctggacctcctgtgagtgctcctggagaccagggtgctgct
ggacctgctggacctagtggcgctaaagtgactggcaaggacggtagtaatggtcagcct
ggacccattggaccacctggacctcgtggacgctctggagagtctggcccaattggtcca
cctggtaaccctggaccccctggccctcctggtccccctggccctggcattgacatgtct
gccttcgctgggttgtctcagcctgagaagggacctgatcctctgcgttacatgcgtgct
gatgaggcctccagctctcttagacaacatgatgtggaggtggacgccacactgaagaca
atcaacagccagatcgaggacatccgcagcccagatgggtcccgcaagaaccctgcgcgc
tcctgcagagacctgaaactctgccaccctgaatggaagagcggtgactattgggtggat
cctaaccttggtagcgctgctgatgccatcaaagttttctgtaacatggagaccggagag
acctgtgtgaagcccagcactcccaaaatcccacgcaagaactggtggagcagcaagagc
aaggcgcagaagcacgtgtggtttggagagagcatgaatggtggattccacttcagctat
gctgatagcagccatactcctagtactaccagcgtccagctgaacttcctgagactgctt
tctactgaggccactcagaccatcacctaccactgcaagaacagcattgcttacatggac
caagccacaggcaacctgaagaaggccgttctgctgcagggctccaatgatgcggagatc
agagcagagggcaacagccgctttacatatggagtacttgaggatggctgcaagaagcac
acaggtcagtgggccaagactgtgattgagtacaaaactcagaagacatccaggctgccc
atcgtggacattgctcccatggacattggaggagcagatcaggagtttggagtggacgtt
ggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
