Cyprinus carpio (common carp): 109059664
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Entry
109059664 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109059664
09122 Translation
03013 Nucleocytoplasmic transport
109059664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109059664
03041 Spliceosome [BR:
ccar03041
]
109059664
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109059664
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109059664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
109059664
NCBI-ProteinID:
XP_042570960
Ensembl:
ENSCCRG00000025963
LinkDB
All DBs
Position
A25
Genome browser
AA seq
685 aa
AA seq
DB search
MSSDAVKKRKPKVIRSEAGAPETKRGRAEGDQDVRVYNEEVELEVRDEXREVELVFRDTC
EDFVMFMEEIQELKAGGAKVQSVEIEERRTQCSVHFITLKKLNRLAHMRLKKGRDQTHEA
KQRVDVLHLQLQNLLYEVMHLQKEIGKCLEFRSQHEEIELVSEEEFFQEAPAEISRPHVT
RDDQHQLTLARLDWELEQRKRLAEQYKMSLARKEKIQKAIEQKREYLSSLQPGLQNIMQA
SLPVQEYLAIPFEHMQKQAEVARHLPPPLYVLLVQAGAYGQACDKNLSVSISGDVDEAKA
LSRPPEDSQDDESDSDAEEEQQNTKRRRATLGVQLDDKRKEMLRRHPLSLCVDLKCKDGS
VLHLFFYYLMNLNILTVKTKVSTTTDLSGAVSAGELLNSESLLNCLYASDHGKETPNPAN
RYQFDKVGITTFGDYVSDLGHPFVWVQKLGGLQFSSGGAQSGLTGSALSASHMERTMKLL
RGRLQARLALHKQFSSLEHSIIPVSSECQHLFPAKVVSGLVRWTTMSCQEFTELGFVQHV
LKAGLVHETDLFFMATVERGTARLRAAVVMNPRYPEVAPLFSLSLHWKGERSGRTDDNLQ
AMESEVNVFRSELQGPRPGLQLLTNQIQRLCVCLDVYLETESQVCDGSEGPKEFPREKMC
LRTARGPSRLKPFKYNHPQGFFSHR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagacgctgtgaagaagagaaagccgaaggtgatccgaagtgaagccggggct
ccggagacgaagcgaggtcgagcagaaggcgatcaggacgtccgtgtgtataatgaggag
gtggagttggaggtcagggacgagnngagagaggtggagttggtgtttagggacacgtgt
gaggattttgtgatgtttatggaggaaatccaggagctgaaagccggcggcgcgaaagtc
caaagcgtggagatcgaggagagacgcacacagtgcagcgttcatttcatcaccctgaag
aaactcaaccgcctggcacacatgcggctgaagaaaggccgagaccagacgcacgaggca
aagcagcgagtggatgttcttcatttgcagctgcagaatctgttgtatgaggtcatgcac
ctgcagaaagagatcggcaaatgtctcgagttcaggtctcagcacgaggagattgagttg
gtcagtgaagaggagttttttcaggaggctccggccgagatctcacgccctcatgtgacc
cgcgatgaccagcaccagctcacgctcgcccgtctggactgggaactagagcagaggaag
aggttggcggagcagtataagatgtctctggctagaaaggagaagatccagaaagccatt
gagcagaagagagaatatctgagcagccttcaacctggactgcaaaacatcatgcaggcg
tctctcccagtgcaggagtatctggcgataccgtttgagcacatgcagaagcaggcggag
gtcgcccgtcacctgccgccccctctgtacgtgctgttggtccaggcgggtgcgtacgga
caggcatgcgacaaaaacctgtctgtgagcatcagtggagatgtggatgaggccaaagct
ctctccaggcccccggaggactcgcaagatgatgaaagtgattcggatgctgaagaggag
caacagaacacaaagcgccggcgcgcgactttaggtgttcaactggatgacaagcgtaaa
gagatgctgagacgccaccctctctcgctctgcgtggacctcaagtgcaaagacggcagc
gtcctgcatctgtttttctattatctcatgaatctcaacattctgactgtgaagaccaaa
gtttccaccactacagatctgtccggagccgtcagcgctggagagctgctgaactccgag
agtctgctgaactgtctttatgcgtccgatcacggcaaagagacgcccaaccctgccaac
cgctaccagtttgataaagtcggaatcactacgtttggggattatgtgtcagatctcgga
cacccatttgtttgggtgcagaaactgggtggcctgcagttctcgtctggtggtgcgcag
tcggggctgacaggcagcgctctgagcgccagtcacatggagaggaccatgaagctgctg
cgaggaagactgcaggctcgactggccctacacaaacagttcagctcgctggagcacagc
atcatacctgtctccagcgagtgccaacatctgtttcctgctaaagtggtttcaggtctc
gtgcgctggaccacgatgagctgccaggaattcactgagctgggcttcgtgcagcatgtg
ttgaaggcgggtctggtgcatgagacggatctgttcttcatggctactgtagagagagga
acagctcgtctgcgggccgctgtggtgatgaacccgcgttaccctgaggtcgctccgctc
ttctctctctctctacactggaaaggagagcgcagcgggcgcaccgatgataacctgcag
gcgatggagagcgaggtgaacgtgttccgctccgagctgcaggggccacgtccgggtctc
cagctcctgaccaatcagatccagcgcttgtgtgtgtgtctggatgtgtatctggagacg
gagagtcaagtgtgtgacgggtctgagggacccaaggagtttccccgagagaagatgtgc
ttgcgcactgccaggggtccgagccgtctgaagcccttcaagtacaaccatcctcagggc
ttcttcagtcaccgctga
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integrated database retrieval system
