Cyprinus carpio (common carp): 109060196
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Entry
109060196 CDS
T05134
Name
(RefSeq) transcription factor Sox-1b-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109060196
Transcription factors [BR:
ccar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109060196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
109060196
NCBI-ProteinID:
XP_042617044
Ensembl:
ENSCCRG00000022020
UniProt:
A0A9Q9YBA5
LinkDB
All DBs
Position
A1:29091032..29094448
Genome browser
AA seq
342 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNTGHTGPNGGSKVNQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEPEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLAGSGGGGGMGLGMGMGAAGVGQRLDSPVGHGGNTAASYAHMNGWTNGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHGHHHHPHNPQPMHRYEMTALQYSPISNSQS
YMSASPSGYAGISYAQHQNSSVASSGAIGTLGSLVKSEPSVSPPVTVHSRAPCPGDLREM
ISMYLPAAEAGDPSVQSRLHAVPQHYQSSATSVNGTVPLTHI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggacttgcattccccgggaccccagactaacacaaac
acgggccacacgggacccaacggcggcagtaaagttaaccaagaccgtgtcaagagacct
atgaatgcgttcatggtgtggtctcggggtcagcgcagaaaaatggctcaggagaatcca
aagatgcacaactcagagatcagcaagcgcctcggagcggagtggaaggtcatgtccgag
ccggaaaagcgacccttcattgatgaggcgaaaagactgcgtgccatgcacatgaaggag
cacccggattacaagtaccgacccaggaggaagaccaagacgctgctcaagaaggacaag
tactctttggcgggtggcctgctcgctggatcaggtggcggaggcggcatggggctggga
atgggaatgggtgcagcgggggtcgggcagaggttagacagtcctgtgggtcacggcggc
aacaccgcggcgagctacgcgcacatgaacggctggaccaacggggcgtactcggggcag
gtagcggccgccgcggctgcagccgcaatgatgcaggaggcgcagctcgcctacagtcag
cacccgggcagcggagcgcatcaccaccacggacaccatcaccatccgcataacccccag
cctatgcaccgctacgaaatgacggctctccagtacagccccatctcaaactctcagagc
tacatgagcgcctcgccgtcaggttatgctggaatatcctacgcgcaacaccaaaactcc
agcgtggcttcctctggggccatcggcacgttgggctcgctggtgaaatcggagccgagc
gtaagtcctcccgttacagttcactctcgagccccttgtcccggagacttgcgagagatg
ataagcatgtatttaccggcggcggaggcaggggacccgtccgttcagagcagacttcac
gctgtaccgcagcactatcaaagttccgcgacgagcgtaaacggaaccgttcctctgaca
cacatatga
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integrated database retrieval system
