Cyprinus carpio (common carp): 109060292
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Entry
109060292 CDS
T05134
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccar03009
]
109060292
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109060292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
XRCC4_CC
Motif
Other DBs
NCBI-GeneID:
109060292
NCBI-ProteinID:
XP_042604306
Ensembl:
ENSCCRG00000047446
UniProt:
A0A9Q9XM45
LinkDB
All DBs
Position
A4:4200307..4225364
Genome browser
AA seq
2798 aa
AA seq
DB search
MKLKAKPPSHKTANTYRFVTFSERLAKVNIDVIHRIDRTGSYSEEVETYFYEALIKWKDL
NLTDHFKKFFQEVLSKSQSFNMLVFHQNAVVESLKTHLSVKNSMAYQPLLDLVVQLARDL
QMDFYPHFCDFFIIVTSILETQDTEVLEWAFTCLSYLYKYLWRMMVKDIDKIYSLYSKLL
AHKKEHIRNFAAESFSFLMRKVSDYDALFTLMFSNLSENPQKARGAGQLIFEMCRGVCNM
FHSCATKALPVVLKKLGPAAGQDVELPWDSIKEALDHMAESSANYVDKEHLLVLWDSLQG
SLKDVLGKLETSNAAEANEQLERILYIYHTLVEHRKGAKITKAQSVCETLLELVQAPGLS
YSCHRLLLQVVSALLMGENLALPASSIHELVKKVFNSGMDRDLILSFTKEMFDLKQFEQL
FLPSVLQYLEQLFCTEDSVNQQLVLELLVGLIVSKAPPPTDGSMAFEKYPLVFTIRSTGP
ERDQSVSVPQQILSLIDVPADQPLSDLSHPWAALVLLPHVRPLEASSVIPAVTALLNRLL
QEVCSETLGRGGLFVARQALSTLLSFKETAAVQSLLPAELVRNIIEKHPTDLSALLLGDL
YYTRLALNGCSAQLSHGSLLELYQILHSNFSSNISKIRLLTFRIMSNFEADLPKPAEGEE
SSNAQTVFAVCLQAEQVPATVQDYREKLLHLRKLRHDLVQPCVPKGPFHEVPLRYLIAML
FVNFRPLWDAVIDLLVTHAKEMDNKSFWKVYYEQLEMVAGLAEEELQADDDEDDEEGGSE
QHQAAKQLRGSGTSVIESGDVGVLFLEQLDQMLNPAERTDFTNFRNLLWRAMAQFPDRVE
PRSRELSPLLLRFISNEFYPADLQVAPTQDLMKKSSSSSEQEMGEEVDADMEEDEEKVED
SKQPKKKIPRKAAAKQLIAHLKVFSKFTNPKALFMEAKLSELYTQLLCHKDQQVQKIALD
CLMTYRDPNILPYKENLERLLDDKHFKDEIVQFNISEEGSVVLPSHRTQLIPVLMRILYG
RMCPRVGNRFQGKANTASRSSIVLRFLAGCQPEEMGMFIDLLLEPVCHHSEGACLAAVER
AVAETNLSAVLPLGRQHSLLNTIEMLIHKMGHLIHMYLPKVLQILLCMTASVSFILDHRE
QLKPGCINPLKNLRRLGILRIQDFFDGFESYSFTADELDAVFQAVVWPKVCLLSTESPYA
PTPLLKVIRVWIQNPRYFPLLAKQRPGRPECDVLLNVFALLSSKNVSAITTAVVIDIAES
LLTTPDYEPKEDESELIVNDCVIPDPSQSCDVSDSLTIGCRLLLPHIPALLRYLSGVVRN
SERLKKKQFRAQVSKELNILSKISRFVAEKEQSSTLIGLLLPYLHKPQTVQETELDILGT
VKNLLRQCSEPSVFLKPLSKLFSIIHNRLPRQALCEAFQTLSDMDGELKYITDVVTQLNT
FDSRHLDEIHFDVRLVAFQKVTKHIKEMSTLDMRYLTAIMHNCFHSLEIGDMSLADSATM
CLSAVITQLSEVGCPEVEYKEIVQYTILDAIRKGLKSKTESVRNDYTTVLACLVKTFPNR
PEFHDLVQLTDYNDPESDFFEHMKHIQVYRRGRALRKFARQLTEGKVVMSSRSMQNYIMP
YAMIALVDEKLLKYEPMTTAAVEVIGAVCRRLTWSKYLFYLKHFVHVLQTGIAEQKLAVS
LLLTVLDAFHFDHETLSKEIGAAKNKKTDEPSVVEEAEDEDEAAETMDTDESDAEDAMET
AEAGAAVSTATDAETEGPAKPKEGKKSQTKKVPPVVSSGLPQSERDLETLISSIHHTVTQ
TVLPKLHKCLTAKVKRDDEHKMVKSKDVKDEEVARVPIAFAMIQLMKSLPKDVMEANLPG
IFLKVCVHLRSRFQEIRDVARNTLMKIIESLGHQYLHYLLSEMQAVLVKGYQVHVLTFTV
YHLLSVLKPSLNGGDLDPCMDMLITIFNNELFGAVAEEKDIKGIVSKVMEARHSKSSDSY
ELLGQFCSQERVIHLILPLKEMLENTASLKVSRRVHAVLRRIVAGLLLNQSMSPQSILLL
SHGLVSESLPLITSKNKEKQRPPPDPRLPPASCLLLPAAPKRGGAKAAISSRTNMHILVE
TGLSLLHCSLKSSKINSSVPSVKEMLDPFVSLLLDCLNSMHVKVITEALQAFIWILKFPL
PAVEQNYDQLTKQLFVLLKDYAKAGAGRGENFHLVQNCFKAITVLVKSMTKPVTQTQLQV
LLGYAEEDIYDNSRQATAFGLLRAILSRKLVVPEMEDVMKKVAKFAIDGSNEQVRMRCRQ
IYLKYLMDYPLGKKLRKHFDFIVSQLTYEYDTGRQSALELMAFIFQKFPQALLHEHCGLF
FVPLSLAMLNDDSAACKKMVALAIKSLLNQLDLQHQNSMFNLVNTWLTGEKPALRRLGAQ
VCGLFVEVEGEKFNRRLDVLIPLIEKEIHTSNFEDIEEEEDEKAADRLLFCYLTLIIKLI
KDCGFLELHKPTDLLNNIWSHIYSHLRYPHCWVWLTASQILGLLFAAHKPEELLALWSSQ
ENMSKATQPVASAFLTENLSQKMRELVLSLCYQLQSKFLDISAGEQVVKNLLYVAKVIYL
ISPESDTVNPAEEPEGEEKETADNMEENEEEEDKKQKLEDEQNENKPPSLLWVMKKLSLL
AKREAADTPKVPLKVDCVFVFWLLWVLAVDLGKDRLGPYLTTIIAPLYRELDSTYADQDP
TLKNLAQELIELLKKHVGLERFSLAFAAVQKEASQRRTSRKKAKAMQAVVNPDIAARKKV
KKQLKKNEAKKRKILFVRTGHKAKKHKGTSLKDLAIIS
NT seq
8397 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaaagccaagcccccttctcataaaacagcaaacacttaccgctttgtcacg
ttttctgagaggctcgcgaaagtaaacattgatgtcattcatcgcatcgacaggactgga
agttattcagaggaggtagaaacctatttttacgaagccctaataaaatggaaagacctg
aatttgacagatcacttcaagaagttttttcaagaggtgttgagcaagagtcagtctttc
aacatgctggtgtttcaccaaaacgctgttgtggagagtctgaagacccacctgtcagtg
aagaacagcatggcttaccaacctcttctagatcttgtagttcagcttgctcgcgacctc
cagatggacttttaccctcacttctgcgacttcttcatcatcgtcacgtctatactggag
acacaagacactgaggtgttggaatgggccttcacgtgtctgtcatatctgtacaaatac
ctgtggaggatgatggtgaaggatattgacaagatatacagtctttacagtaagcttttg
gcgcacaagaaggaacacatccgcaactttgctgccgagagcttctcttttttgatgaga
aaggtgtccgattatgatgctctcttcacacttatgttctccaacctgtctgagaaccct
cagaaggccagaggagcgggtcagctgatctttgagatgtgtcgaggagtctgtaacatg
ttccactcctgtgccactaaggctcttccagtggtgttgaagaaacttggcccagcagcc
ggtcaggacgttgagttaccttgggattcaataaaagaagctctggatcacatggcggag
tcttcagccaactatgttgacaaagagcacctgctggtcctgtgggattccttacaaggc
tctctgaaagacgttcttggaaagttagagacgagcaatgctgctgaggctaatgagcag
ctggagaggattctgtacatctaccatacacttgtggagcatcgcaaaggagcaaaaatc
acaaaagcacagtctgtttgtgagacacttcttgagttagttcaggcaccaggactgtcc
tactcctgccacaggctgcttttacaagtggtctcggctctgttgatgggagagaatctg
gcgttacctgccagcagcatccatgaactggtgaaaaaggtcttcaatagcggcatggac
cgtgacctcatattgtcatttaccaaagagatgtttgacctgaaacagtttgagcagttg
ttcttgcccagtgtactgcagtatctggagcagctcttctgcacggaagactctgtaaac
cagcagctggttctggagctgctggttggtctgattgtgtccaaagctccgccccccact
gacggctccatggcttttgaaaagtacccattagtcttcactatcaggtcaactggacct
gaaagagaccagtcggtctctgttccccagcagattctttctctcatagacgtccccgcc
gatcaaccgctctctgacctttctcacccctgggctgcactggtgctgctcccacatgtc
aggccattagaagcatcaagcgttataccagccgtcactgcactactgaacagattgctg
caggaagtgtgcagcgaaactctggggagaggagggctgtttgtagcacggcaggctcta
agcaccctgctcagcttcaaggagacggcagcggttcagtcacttctgcctgcggagttg
gttagaaacatcatcgagaaacaccctacggatctttcagccctgctgttaggagatctg
tactacaccagactggcactcaacggctgctcagctcagctgtcccatggttctctgctg
gaattataccagatactacattccaatttttcttccaacatctccaagattcgtttgctg
accttcagaattatgtcaaactttgaggctgatcttcctaaaccagcagagggagaggag
agctcaaatgcacagacggtgttcgccgtgtgtctgcaggcagagcaggtcccggccaca
gtgcaggactacagggagaaactgctacatcttcgtaaactccgtcatgacctggtgcag
ccctgtgtgcccaagggaccttttcatgaggttcctcttcgttatcttattgcaatgctg
tttgtcaatttccgacctctctgggatgcagttattgatctgttggtgacccacgctaaa
gaaatggacaacaagtcattctggaaggtctattatgaacaactggagatggttgctggt
ctagctgaggaagagcttcaggcagatgatgatgaagatgatgaggagggaggcagtgaa
caacatcaagcagcaaagcagcttcgaggttcggggaccagtgtgatcgaaagcggggat
gtgggagttttgtttctggaacagctggaccagatgctgaatcccgctgagcggaccgat
ttcacaaacttccgcaacctgctttggcgagcaatggcccagtttcccgacagagtggaa
ccacgcagccgagagctcagcccattactgctgcgcttcatcagcaatgagttctaccca
gctgacctgcaggtggctccaacacaggacctcatgaagaagagcagctcttcatcagag
caggaaatgggtgaagaggtagatgctgacatggaagaagatgaagagaaggtggaagat
tccaaacaacccaagaagaagatcccaagaaaagcagcagccaagcagctcattgcacac
ttgaaggtcttctccaaattcactaacccgaaagctttatttatggaggcaaaactaagt
gaactgtatacccagcttctgtgccataaagaccaacaagtccagaaaatagcactggac
tgtttgatgacatacagagatccaaacattctcccttacaaagagaatctggagagactt
ctggatgacaagcattttaaagatgagattgtccaattcaacatctcagaggaaggatcc
gtggtacttccgtcacacagaacccaacttattcccgtgcttatgaggatactatatggg
cggatgtgccctagggttggtaatagatttcagggtaaggcgaacacagcttcgcgctcc
tccatagtgctgcgtttcctggcaggctgtcagccagaggagatgggaatgtttatagat
ctactgctggagcctgtttgtcatcattctgaaggtgcgtgtctggctgcagtagaacga
gctgtagccgagacgaacctgtctgctgttctccctctgggtcgccagcacagccttctc
aacactatagaaatgctcattcataaaatgggccatctcatccacatgtacttgcccaaa
gttctgcagatcctgctgtgcatgacggcctcagtgtcatttatactggatcacagagag
cagctcaagcctggttgcatcaatcctctgaagaacttgcggcgtctggggatcctgcgc
atacaagacttctttgatggatttgagtcttacagctttactgcagatgagctggacgct
gtgtttcaagccgtggtgtggcctaaggtgtgtcttctgtccactgaaagcccgtatgca
ccaacgcccctcctgaaagtcatccgtgtgtggatccaaaatcctagatatttcccattg
cttgctaagcagagaccgggccgccctgagtgtgacgtcctgctcaatgtgtttgctctg
ttatcctccaaaaacgtgtctgccatcacgacggctgtggtgatagatatagccgagagc
ttgctgaccactccagactatgaacccaaggaggatgaatcagagctgattgtgaacgac
tgtgtgatccccgatcccagtcagagctgtgacgtgtcagattctttgactatcggctgc
cgtctgctcctccctcacatcccagcactgctgcggtacctcagcggagtcgtgcgtaac
tctgagcgcctcaagaagaagcaattcagagctcaagtcagcaaagagctcaacatcctc
tcaaagatcagtagatttgtggctgaaaaagaacagagttcaacactcattggtttgctt
ctgccttaccttcacaaaccccaaactgttcaggaaacggagctggacatcctgggtacg
gtgaagaatctgttgagacagtgttcagagcccagcgtgttcctcaaacctctcagcaag
ctcttctccatcatccacaacagacttccccgtcaggcgctgtgtgaagcgtttcagact
ctgtcagacatggacggtgaactgaagtacatcacagatgttgtgactcagctcaacacg
tttgatagccgccatctggacgagattcactttgacgtgcgtctcgtggcgttccagaag
gtcaccaagcacattaaagagatgagcactctggatatgagatacctgactgctatcatg
cacaactgtttccattccttagagatcggtgacatgtctctggcagacagcgccaccatg
tgtttgtcagctgtaataacgcagctctctgaagtcggatgcccagaggtggaatacaag
gagattgtgcagtacaccatactggatgcaatacgaaagggtttgaagagcaagactgag
agtgtacgaaatgattacactacggttctggcctgcctggtgaaaaccttcccaaaccga
cctgagtttcatgatctggtgcagctgacagactataatgatcccgagtcagatttcttt
gagcatatgaaacacatacaggtgtacagaaggggtcgagcgctcaggaagttcgccagg
cagctgacggagggcaaggttgtgatgtcatcacgctccatgcagaattacatcatgccc
tacgccatgatcgctctagttgacgaaaaactgctgaagtatgaacccatgacaacagcc
gccgtagaagttattggtgccgtgtgcagacgcttgacctggtccaagtacttattctac
ctcaaacacttcgtccatgttttacaaactggaatagctgagcagaaactggctgtcagc
ttgttgctgaccgttcttgatgcattccactttgaccatgagactctcagtaaagaaatc
ggggcggccaagaacaagaagacggatgagcccagtgttgtggaagaggctgaggatgag
gatgaggcagcggaaaccatggacacggatgagagtgatgctgaagatgccatggaaacc
gctgaggctggagcagccgtttccacagcaacggatgctgagacggaaggccctgccaaa
ccaaaagaaggcaaaaagagccagacgaagaaagttcctcctgtcgtcagcagtggtctt
ccacagagtgaacgcgatctagagacgctcatttccagcattcatcacacggtcactcag
accgtcctgcccaaacttcacaagtgcctcacagcaaaggttaaacgagatgacgagcac
aagatggtgaagtctaaggatgtgaaagatgaagaagtggccagagtgcctattgcattc
gccatgattcagctcatgaagtctctgccaaaggatgtcatggaagccaacttgccaggc
atcttcctgaaagtgtgcgtccacctgaggagccgtttccaggagatccgtgatgtggct
cgaaacactttgatgaagatcatagagtcacttgggcatcagtatcttcattatctgctc
agcgagatgcaggcggtcttagtgaaggggtatcaggtccatgttttgaccttcactgtc
taccatttgctctctgtcctaaaaccatccttgaatggaggggatctggacccatgcatg
gacatgctcatcacgatcttcaacaatgagttgtttggggccgtagcagaggagaaggac
atcaaaggaatcgtttccaaagtgatggaggcccgtcacagcaagagctccgactcgtac
gagcttctcggccagttctgcagtcaggagcgcgtcattcacctcatcctgccgctcaaa
gagatgcttgaaaacacggccagtctgaaggtgtcgaggcgagtgcatgctgtgctcagg
aggattgtggcggggcttttgctcaatcagagcatgagccctcagtccatcctactgctc
agccacggactcgtcagtgagagtctgccgctcatcaccagcaaaaacaaagagaagcaa
cgtccacctccagatcctcgcctgcctccggcaagctgtttactgctgccggccgctcct
aagagaggaggcgcgaaagccgccatcagcagcagaacaaacatgcacatcctggtggaa
acggggctcagtttgcttcactgtagtctgaagagttcaaagatcaactcatctgtcccg
tcagtaaaggagatgctggatcctttcgtgtctctcctcctggactgtcttaactccatg
catgtaaaggtgattaccgaggctctgcaggccttcatctggatcctgaagtttcctctg
ccggcggtggagcagaattacgaccagctgaccaagcagctctttgtcctgctgaaggac
tacgctaaagctggagccggccgtggcgagaacttccacctggttcagaactgctttaag
gccataactgtgttggtgaagagcatgacaaaacctgtaacacaaacacagctgcaagtg
cttctgggatatgctgaggaggacatttatgataattcgcggcaagccaccgcgtttggc
ctcctgagggcgatcctctccaggaaactggtggtgccggagatggaggatgttatgaaa
aaagtggccaagtttgccatcgacgggtcaaacgaacaggtccgcatgcgctgcagacag
atctatctgaagtacctgatggactatccactgggcaagaaactcaggaaacattttgac
ttcatagtgtctcagctcacttatgaatatgacactgggagacagtctgccctggagttg
atggctttcattttccagaaatttcctcaggctctcttgcacgagcactgcggtttgttt
tttgtgcctttgtcgttggccatgttgaacgacgattctgcagcctgtaagaaaatggtg
gctctggccatcaagtctctgctgaatcagctggatctacagcatcaaaattccatgttt
aacctggtcaacacctggcttacgggcgagaagccggctctgcggcgactcggagctcag
gtttgtgggctgtttgtggaggttgaaggggaaaagttcaaccggagactggacgtcctg
atacctctcatcgagaaagagatccacacttccaactttgaggacattgaggaagaggag
gatgagaaggctgcagacagactgctcttctgttacctcacgctcatcatcaaactcatc
aaagactgcggctttctggagctccacaaacccacagacctgctcaacaacatctggagt
catatttattcccatctgcgttaccctcattgctgggtctggctgacggcgtctcagatc
ttaggtttgctgtttgctgctcataaaccagaggagctcttggccttatggagctctcag
gagaacatgagtaaagccacacagcctgtggccagcgcttttctcactgaaaacctgtct
cagaagatgagagagctggtcctgtccttgtgttaccaactgcagtccaagttcttggat
atttctgctggagagcaggtggtgaagaacttactttacgtggccaaggtgatctacctc
atctcaccagagtctgataccgtgaatccagccgaagaaccggagggtgaggagaaagaa
acagccgataacatggaggagaatgaagaggaggaagacaagaagcagaagcttgaggat
gaacagaacgagaacaagcctccgtctcttctctgggtgatgaagaagctttcattactg
gccaaaagagaagcagcagacacacccaaagtgcctttgaaggtggattgtgtttttgtt
ttttggttgttgtgggtgttggctgtggatctcgggaaagatagacttgggccgtatctg
accactatcatcgctcctctctacagagagctggacagcacgtatgcagaccaagacccc
acactgaagaatctggctcaggagttgatcgagttgttgaagaagcatgtcggtctggag
cgattctctctggcttttgccgcagtgcagaaagaagcctctcagagacgaacttcacgc
aaaaaggccaaggccatgcaggctgttgtaaatcctgacattgctgccagaaagaaggta
aagaagcagttgaagaaaaacgaggccaaaaagcggaaaatcttgtttgtgcgcacagga
cataaagcaaagaaacacaaaggcacatcactgaaagacttggctataatcagctga
DBGET
integrated database retrieval system
