Cyprinus carpio (common carp): 109060540
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Entry
109060540 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109060540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109060540
03036 Chromosome and associated proteins [BR:
ccar03036
]
109060540
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109060540
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109060540
PBAF complex
109060540
GBAF(ncBAF) complex
109060540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
109060540
NCBI-ProteinID:
XP_042597476
Ensembl:
ENSCCRG00000040875
UniProt:
A0A9Q9XAB9
LinkDB
All DBs
Position
B16:complement(23164365..23179418)
Genome browser
AA seq
1096 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGSGSSIGRKKDGGPSSKFWESSETVSQLETVRMWIGKHY
KKYVQNDSPTCKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDMEQKQVNK
LKDIIKRHQGTITEDKSKATHIIYPSPAQGEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSISDVDGDVEDPPSSEKPWRVHAKWVIDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRXDRKSLVAGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGTVADLDDQEDDSLASGGKEED
EQGKIVVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRAHAFLEQWGLVNYQVDSETRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNPKGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSSGKVDPAFGLENSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKEKNETTEKSEPQEEEESKGGESKTAEKDKEEDM
ETTEEGKEGEEEKEEGKKNLELDIGEGNISTAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQ
MEQQAAAQQNAGGHHGPPPHGPPPAMHPGHPGHPGHPGPGYPPMHHPMGPLHAPQTGPMV
GPGQPMPGQPMPGRMMPGPPPVGPPQGGMLPMMGPRHPGPPNGMYPGPPPTAQPDGMPPG
PVGPSVSAPPPRAAEN
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggctggccag
gcgggctccggttcctcgatcggacggaaaaaagacggagggccttcttccaaattttgg
gagagctcggaaacggtgtcccagctagagacagttcggatgtggatcgggaaacattat
aagaagtatgtccaaaacgactctcctacatgcaaaactttggctgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagagtcagcaatcctgcccttaccaaa
ttacccgccaagagctttctggatttcaaacctggaggagccctttgccacattctgggt
tctgcatacaagttcaaaagcgagcagggctggaggaggtttgatctgcagaacccatcc
agaatggatagaaacgtggagatgttcatgactattgagaagactcttgttcagaacaac
tctttgacccgaccgatcgtatacattgtgtctgacatggagcaaaagcaagtcaacaag
ctgaaagacatcatcaagagacatcagggcaccatcactgaagataagtcaaaggccact
catattatttacccatctccagcccagggtgaagaagaggaatggctacgtcctgtcatg
cgcaaagacaagcaagttttggttcactggggtaattaccctgacagttatgatacgtgg
gtatcaataagtgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcatcgacacagatgctttcaacgagtggatgaatgaggaa
gattacgaagtggatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgtnnggaccgcaagtccctggttgccggcaag
aagaggagacgctctccatccccacccagcacccctgcagagtcccgcaaaaagggcaag
aaagggaatcctggatcacaggggagacgccgtggacatcaaaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccctcccctgtaccaggaatggaggaagttaca
ttgccaaagaatgtcaatcagaaaaaggacagtgagaacacgccagtgaaaggcggaacg
gttgctgatttggatgaccaggaagatgattcactagcatctggtggcaaggaggaagat
gaacagggcaaaattgtggtcaatcgtctgattgactctgaggacaatgtgactgaacaa
acccatcacatcattatacccagctatgctgcctggttcgactacaacagtatacatgaa
attgagaggcgtgccctgccagaattcttcaatggcaaaaacaaatccaagactccagag
atctatctggcttatcgtaacttcatgattgacacgtaccggctgaatcctcaggagtac
ctgacctccacctcctgcaggaggaacctcactggagatgtgtgtgcagtcatgagagca
catgcctttttggagcagtgggggctggtgaactatcaggttgattcagagaccagaccc
ctccctatgggccctccaccaaccccacatttcaacgttctggctgatactccctctggc
ttggtgccgctgcaccaccgccccccacaggttccccctgctcagcagatgctaaacttc
ccagagaagggcaaagacaagccaactgacctgcagaactttggcctccgtacagatatt
tactcaaagaagaatcccaagggtaaaggggctgcaggtgggagagagtggactgagcaa
gaaacattgcttctgttggaggctctggagatgtataaggatgactggaataaggtttcg
gagcacgtgggcagccgtacacaagatgagtgcatcttgcacttcctgcggctgcccata
gaggatcaatacctggagagttctgaagcctcactaggccctttggcttaccagccgatc
ccctttagccaatcaggaaatcctgtcatgagcactgttgcattccttgcctctgtggtc
gacccgcgtgtggcggcggcggctgccaaagcagctttggaggagttctcgcgtgtgcgt
gaggaggttcccacagagctggtggaggctcatgtgaagaaggtacaggaagccgcgcgc
agctcaggaaaagtagaccctgcgttcggcctggagaacagtggcattgctggtacagct
cctgaggaaccagagaagacagaacctacagagactgagaagatggacactgactcggat
tcccagcctgataaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcagaa
aagccgacagagacagagaaggaaaagaatgagactacagagaaatctgagccgcaggaa
gaggaagagagtaagggaggagaatccaagacagcagagaaagacaaagaggaggacatg
gagaccacagaggaagggaaagagggtgaggaagaaaaggaggaaggaaagaaaaacctt
gagttggatatcggagagggcaacatctccactgctgccgctgctgctctggcctctgct
gccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtggct
ctgctggtagagactcagatgaagaagctggagctcaaactcagacactttgaggagctg
gagactatcatggaccgtgagaaagaagcactcgagctccagaggcagcagcttttgaca
gagcgacaggcgttccacatggagcagttgaaatatgctgagatgaaggctcgtcagcag
atggagcagcaggcagctgcgcagcagaatgcaggaggacatcacggaccacctccacat
ggcccacctccagccatgcaccctggacacccaggacatcccggccacccaggccctgga
tatccccccatgcaccatcccatgggtcccctccatgcccctcagacaggaccaatggtt
ggaccaggccagcccatgccaggtcagcctatgccaggccgaatgatgcctggacctccc
ccagttggacccccacagggtggcatgctgcccatgatgggccctcgacaccccggacca
cccaacggcatgtacccaggtccacctccaaccgcacagcctgatgggatgccccctggc
ccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaaaactaa
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