Cyprinus carpio (common carp): 109060938
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Entry
109060938 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04120
Ubiquitin mediated proteolysis
ccar04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109060938
04120 Ubiquitin mediated proteolysis
109060938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109060938
Enzymes [BR:
ccar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109060938
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
U-box type E3
109060938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
109060938
NCBI-ProteinID:
XP_042569287
Ensembl:
ENSCCRG00000028253
UniProt:
A0A9Q9ZPN0
LinkDB
All DBs
Position
A23:complement(15167696..15186859)
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AA seq
1345 aa
AA seq
DB search
MEQLSPEEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPGPLPGPSGASSQPVPPAP
SHTLGLNAQNVTPATSPVGASGVAYRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKSMSQVDVDSGIENMEVEESDRSEKRNLAEKDSSSSXKILRVSWKEQDRDVIFLP
SLAAEFQKNPGDVYSDFRDLIGQILMEALMMSTRSRDCNPFASLTATSQPITAARSPDCH
LTLVPPSSQSGSPMMPCAGSFGASSLSSLYGCSPNPLALSSARMSAPSVPLAPAAALPGP
PSPPVSRPPASLPPPSPSTPLPISQRYRPYSLSSSIPISPSHRSTQSGMLTPPTTSGIPS
SPSPRHRSTNSSVPFPILPGSPSTMARRTALAARMPSSPFSLLFFGMSDLPQDSSDEELE
EEEDEDFSGVQFGSSLGASGGGMAGDSGNDRFTIESCKETEMLNYLIERFDSVGMEERKA
LKMCSQPAVSQLLSNIRSQCISHAALVLQGTLTQPRAPLQPSLLVPYMLCRNLPYGFIQE
LVRMTHQEEDVFKQIFVPILQGLTLAVKECSFDSDNFKFPLMALVELCEIKFGKTHPVCN
LITSLPLWCPDPLSPGTGREIQRLSFLGAFFSLSVFAEDDTKVGDKFFSGPAITVENTRV
VSQSLQHYLESARGDLFKILHNILLNGETREAALSYMAALVNRNVKKAQMQTDDKLVSTD
GFMMNFLWVLQQLSMKIKLDTVDALYIFHPKCRLNVSTEETRLNATMEDLKSWLSELHED
PSKFSEPKFPTECFFLTLHAHHLSILPCCRRYIRRLRAIRDLNRTVEELKNSENQWKDSP
LASRHREMLKRCKTQLKKLVRSKAAQTQGCWTRTCCXRCLQFFSMVIQLILRMVEPAYPG
VTLPLNPEIPKCFAALPEFYIEDVAEFLLFIVQYFPQVLYETCTEDIVTFLVVFISSQNY
IKNPYLIAKLVEVLFVTNPAVQPRTQRFFEMMENHPLSINQLVPALMKFYTDVEHTGATS
EFYDKFTIRYHISTIFKSLWQNINHQGTFLEEFNSGKQFVRYINMLINDTTFLLDESLES
LKRIHEVQEEMKNKEQWDQLPRDQQQSRQSQLTQDERVSRSYLALATETVDMFHILTKQV
QKPFLRPELGPRLAAMLNYNLQQLCGPKCRDLXVENPEKYGFEPKKLLDQLTDIYLQLDC
ARFAKAIADDQRSYSRELFEEVISKMRKAGIKSTIAIEKFKLLLEKVEEIVARNSQSEMD
YNDAPDEFKDXNCIFNWKILDCLIIYPVQLPSGNIMDRAIILRHLLNSPTDPFNRQPLTE
SMLEPVPELKERIQAWMRGKQSGRV
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctcagtcctgaagagatccgtagaaggcgactggcccggttagctggaggg
cagacgtcacagcccagcacccccctcagcacccctttgacatctccacagagagagact
cccccaggacccttgccagggccctccggggcctcttcacagcctgtcccaccagctcca
tctcacactctgggcttaaatgcccaaaatgtcacccctgccacctctcctgtgggggcc
tcgggggttgcttaccgcagccagagcagcgagggggtcagctctctctccagctctcca
tctaacagtctggagacacagtcccaatccctgtcccgctcccagagcatggacatcgac
acagcctcctgcgagaagagcatgtcccaagtagatgtggactcaggaattgagaatatg
gaggtggaagaaagtgatcgcagcgagaaaaggaacctggctgaaaaggattcctcatcc
agtnntaagatcttgcgtgtttcctggaaggagcaggaccgtgatgtcatcttcctcccc
tcacttgctgctgaattccagaagaaccctggagatgtttactctgacttcagagacctg
attggacagattttaatggaggctctcatgatgtccacccgttcgcgtgactgtaaccca
ttcgccagcttgaccgccacatctcagccaattactgctgccagatccccggactgtcat
ctgactctagtcccaccctccagccagagcggcagtcccatgatgccctgcgctggttca
ttcggtgccagctctctttccagtctctacggttgtagcccaaacccactcgctctgagc
tctgccagaatgagtgctccttcagtcccactggctcctgcagccgccctcccgggtccc
cccagtcctcctgtctctcgccctcccgccagccttccacctccctctccatccacccct
ctgcccatctcccagagatacaggccctactcccttagctcgtccatccccataagccca
agccacagatctactcaatctggtatgcttacgccccctacaacttcaggtataccctcc
agcccttcccccagacaccgtagcaccaactcctccgtgcctttccccatcctccccggc
tcccccagcactatggccagaaggactgcgctagctgcccggatgccgtctagccctttc
tccctcctcttcttcggcatgtccgacttgcctcaggacagcagtgatgaagagctggag
gaagaggaagatgaggatttttcaggggttcagtttgggtccagcctgggtgcatccgga
ggggggatggctggtgactcaggtaacgaccgctttaccatagagtcctgtaaagagacg
gagatgctcaactacctcatcgagcgttttgacagtgtgggaatggaagagaggaaggcc
ctaaagatgtgcagccagccagcagtcagtcagctgcttagcaacattcgttcccagtgc
atttcccatgctgcactagtgcttcaaggtaccctcacacagcccagggcccctctacag
ccctcgctgctggttccctacatgctgtgccggaaccttccgtacggcttcatccaggag
ttggtgcgcatgactcatcaggaggaggatgtgtttaaacagatcttcgttcccattctt
caagggctcactttagctgtaaaagaatgttcttttgacagtgacaacttcaagttccct
ctaatggctttggttgagctctgtgaaatcaagtttgggaagactcaccctgtatgcaat
ttgatcacctctctgccattgtggtgtcctgaccctctcagtcccgggacaggaagagaa
attcaaagactctcctttctcggcgcattcttcagtctttctgtgtttgcagaggatgac
actaaagtgggagacaagttcttctccggccctgccatcactgtggagaacacccgtgtg
gtcagccagtcactgcagcattatctggagtccgcgaggggagatctgtttaaaatcctg
cacaacatcttgttgaacggagagacaagggaagcagctctgagctacatggcagctctg
gtgaatcgtaatgtgaagaaggctcaaatgcagaccgatgataagctggtgtccaccgac
ggcttcatgatgaacttcctgtgggtgctgcagcagctcagtatgaagatcaagctggat
acagtggatgctctctacatcttccaccccaagtgtcggctgaatgtcagcacggaagag
acccggctcaatgccacgatggaggacctaaagagctggctctctgagctgcatgaagac
ccatccaagttctccgagcccaagttccctacagagtgctttttcttaacgctacacgca
catcatctgtccatccttccgtgctgtcggcgctacatacggaggctgagggccatcagg
gatctgaacagaactgtggaagagctgaaaaacagtgagaaccagtggaaggattccccg
ttggcaagtcgtcatcgggagatgctgaagagatgtaaaacacagctgaagaaactggtg
cgctctaaagccgcgcagacgcagggctgctggacgagaacctgctgcngcagatgtctg
cagttcttcagtatggtcatccagctcatcttgcgtatggtggagcctgcctacccaggc
gtaaccctgcctctgaacccagaaatccccaaatgctttgcagcactgccagagttttac
attgaagatgtggccgagttcttgctatttattgtgcagtactttccacaggttctctat
gagacgtgcactgaagacattgtgaccttcctggtggtcttcattagcagtcagaattac
ataaagaacccatacttgatcgccaagctggtggaggtgctgtttgtcaccaatcctgca
gtgcagccgcgcactcagcgattctttgagatgatggagaatcacccactgtctatcaat
cagcttgtgccagctctcatgaagttttacaccgatgtggagcacactggagccacaagc
gagttctatgacaagttcaccatccgttaccacatcagcaccatattcaaaagcctgtgg
caaaacattaaccaccaaggcaccttcctggaggagttcaactctggtaaacagtttgtg
cgctacatcaacatgctaattaacgatacaacttttctgctggacgagagtttggagtct
ctgaaacgcatccatgaggtccaggaggagatgaagaataaagagcaatgggaccagctg
cccagggatcagcagcagagccgacagtcccagctgactcaggatgagagagtatcacga
tcgtacctggctttagccacagagacagtggatatgttccatatcctcaccaaacaggtc
cagaagcccttcctcaggcctgaactgggtcctcgtctggctgccatgttgaattataac
ctgcagcagctatgtgggcctaaatgtcgagacttgtaggtggaaaacccagaaaaatat
ggttttgagccaaagaagctcctggatcagctcactgacatttatctgcagctggactgt
gcacggtttgctaaagccattgcagatgaccagcggtcatacagcagggagctgtttgag
gaggtcatttcaaaaatgagaaaagcgggcataaaatccaccattgctattgagaaattc
aaacttctgttggaaaaggtggaggagatagtagcccgcaattctcagtctgagatggat
tacaacgatgccccagatgagtttaaagattgaaattgtatttttaattggaagattttg
gattgtcttattatttatcccgtgcaacttccctctggcaacatcatggatcgagccatc
attctgcgacacctcctgaactctcccactgaccccttcaacagacagcctctcaccgag
agcatgctggaaccagtcccagagctgaaggagcgtatccaggcctggatgagagggaag
caaagtggccgtgtttga
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