Cyprinus carpio (common carp): 109062607
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Entry
109062607 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03030
DNA replication
ccar03410
Base excision repair
ccar03420
Nucleotide excision repair
ccar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109062607
03410 Base excision repair
109062607
03420 Nucleotide excision repair
109062607
03430 Mismatch repair
109062607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccar03032
]
109062607
03036 Chromosome and associated proteins [BR:
ccar03036
]
109062607
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109062607
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109062607
DNA Replication Termination Factors
ELG1-RFC complex
109062607
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109062607
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109062607
Check point factors
HRAD17(Rad24)-RFC complex
109062607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_11
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
DUF815
AAA_14
AAA_7
PhoH
DEAD
TIP49
ResIII
AAA_19
AAA_5
AAA_30
ATPase_2
DNAX_ATPase_lid
bpMoxR
Motif
Other DBs
NCBI-GeneID:
109062607
NCBI-ProteinID:
XP_042579380
Ensembl:
ENSCCRG00000030513
UniProt:
A0A9Q9W9N6
LinkDB
All DBs
Position
B5:complement(30434622..30443328)
Genome browser
AA seq
378 aa
AA seq
DB search
MASTSKVQPQTRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQRWDAQKCFEERRYSHPHVLLRLLSFIANLLSSCRSISKARASSSVNSGSKRYGS
LVLDRLEKSPSFVYLKISHVHRHSCTVKERKPASYYSLPGHNFEQIKPNIDSIDITPDGM
KAIVTLSTGDMRRSLNILQSTHMAYGKVTEEMVYTCTGHPLRSDIANILDWALNKDFTTA
YNQILQLKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLASGTNEKIQL
SSMVAAFQAVRDIVVSDG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagtaaagtacaacctcagacgagaaatttaccatgggttgaaaagtac
aggccacagacattagatgacctcatctctcatcaagacatcctgagcacaattcagaag
ttcatcagtgaagaccgactgcctcatctgctcttctatggacctccaggaacaggaaag
acctctactatactagcatgtgctaaacagctgtacaaagataaagagttcaactccatg
gtcctggagctcaatgcgtcagatgaccgtggaatagatgtggtgcgggggccgatcctc
agctttgccagcacacgaaccatcttcaagaaaggctttaagttggtgatcctggacgag
gcggatgctatgacccaaaggtgggacgcacagaaatgctttgaggagaggcgttactct
catcctcacgtcctcctcaggctgttgagcttcatcgcgaacctcctctcctcctgtcgt
tctatttccaaagcacgagcctcgtcttctgtaaactctggttcaaagaggtatggttct
ctggttcttgatcgtctggagaagtcaccctctttcgtctatctcaaaatcagccatgtt
catcgccattcgtgtactgtaaaggaaaggaagccagcaagctattattcactaccggga
cacaactttgagcaaataaaaccaaacattgatagcattgacatcactccagatggcatg
aaggccattgtgaccctctcaacaggagacatgaggcgatcattaaacattttacagagc
acccatatggcctatgggaaggtgacggaggagatggtgtacacatgtactggacatcct
cttagatcagacatcgccaacatactggactgggctctcaataaagacttcaccactgca
tataaccaaattctgcagctcaaaactctaaagggtctggcacttcatgacattttaact
gaagtccatcttctcattcaccgtgtggacttcccaccctccatccgcatgggcttgctt
ataaaacttgcagatattgagtatcgtctggcctccggaaccaatgagaagatccagctg
agctcaatggttgcagctttccaggctgttagagacatcgtagtcagcgatggatag
DBGET
integrated database retrieval system
