Cyprinus carpio (common carp): 109064322
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Entry
109064322 CDS
T05134
Symbol
nup98
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109064322 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109064322 (nup98)
03036 Chromosome and associated proteins [BR:
ccar03036
]
109064322 (nup98)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109064322 (nup98)
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109064322 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
109064322
NCBI-ProteinID:
XP_042567003
UniProt:
A0A9Q9VL39
LinkDB
All DBs
Position
A21:16522287..16552056
Genome browser
AA seq
1801 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTTSTFGQQNTGFGATGGFGSSAFGTTNNTGGLFGTTQNKPGG
LFGSSTFSQPVTSSTSSGFGFGATSGTSNSLFGSTNTGGGGLFSQQNNAFGANKPATFGT
FGTSTSSGGLFGTTNTTSNPFGGTSGSLFGSSNFTAAPPGTTIKFNPPTGSDTMVKGGVT
TSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNPMAAGTGGLFGAAATATPSTGT
GLFGPSTPNTGFSFGQNKTSFGTSTGGFGTTTGSLFGQPQQQQQQQQQGSSLFKPFGSAT
TTQNNTFSFGNSSSMGLFGNTAASQAGGLFGNTNTSTATGFGTGIFGQTNTGFGNVGTQV
TSGEATTAPPPTTNTTIATSTGTFTNKLANKPTLTLGANTNTSTFGFGATGTGGGLFGNK
TATTGLGTGLGTGFGGAVGTGQTSLFGNNQKAGLHPRSLGTFGTGGFNTGANTLNFGAPQ
QPVALTDPNASAAQQAVLQQQINALAYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKA
LTTPTQYKLTPRPATRVRPKALSSSGSSKSQLFDGLDDDEPSLNNGAFMPRKSIKKLVLK
NLNNSSLYNSPVNREADDLASPSEYPQNGLSLSMDGETREVTVERSGEDDLEVSKFYTNP
ITKPIPHAQPSPLLQDTISEFNMRGTASHRNGLEASSEDISLAEDSIQEERDEELEAQKP
PHPAGIVLTRVGYYTIPSMEELGRMLNENGECIVENFTVGRKGYGSVFFSGEVNLTNMNL
DEIVHFRRKEIIVYPNDKDKPPVGEGLNRRAEVTLDGVWPNDKTTCSQIKSPERLTEMNY
EGRLEAASRKQGARFLEYRPETGSWVFEVAHFSKYGLQESDEEEEAPPTKLELKKLKTGV
PPVIPQLPLTQQQMSPQAQSTAVLELLSHVSELDSDMADITQEHPADSVLGEGDGKRTLE
ENKLRSETPAERKPVSASSQIASSMGINPHTLQASLFAEDDECDLFQEHGSSKLIQDVAS
PEVLLSGAGRQSIGALLQTKFNSGGGLFSQLPEAPFRGIPQKLSKSLASESPWPSLGPSF
LLPAPPPEPTIXTVGTRRLGGPVPLESSITLGKGRLLMDAALFRGRSFRVGWGPNWTLVH
CGDQLSVTEAMKEQSAEIMGFGFLPKPTKSKPITESPFKVHIEQVVGLKPKQSAESLALY
HKPLEIGLKHSTINMEHSCPFIQPAKGVDALHGYAEWIVEVNKDIGGGDAGLAHWRQVWT
LCAALFGHLDDLDVETEQYSDYQQQLERRRSFSHWLSECAAECIEEEVGRALQRNHSEAI
FSYLTCHCISKACKLSQKSGDHRLALLLSQALGSQFCRDLLALQLSDWNSMQTYSFIEEE
RLQIFALLAGKPVWQSTDGCINVCSELDWKRCVAVHLWYMMPPTASVADILSKYESAFQG
SEEVKSYACPPLPPYIDELELLGLDEEMDETESKKPLYDICFHLLKLYSDRHYSLQQLLD
PSTLTADHLDYRLSWHLWNVLQALNYNHLSTPCQGLLHASYAAQLESVGLWEKAIFVLLH
IPDSGRRESAVREMINLHCSLEETEESMEKEQFLTEKLLIPIQWIHQAKAIRACREGDKR
SEALHLYKAGHWNHCQRLVIQHLASDCIINDNHKYLLEFLEGLAVPERSVKIQDWDISGR
VYLDYIHVIQTLQDIQQMESPGYELERLHTEVTSLCSRIERLPCSKAKDRLAQSEMAKCV
ANILRVVLSLQQGGEGTPDPRHIPLCQLAPYIGRLPLPEDYALEELRSLTQSYLQEYVIS
H
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaatcttttggcgctccctttgggggagggacaggaggatttgggactact
tcaacatttgggcaacaaaacactggatttggagcaacagggggctttggatcttcagca
tttgggacaacaaacaacacaggaggactgtttgggaccacccagaacaaacctggtggc
ctatttggctcaagcaccttcagtcagcctgttacatcctccaccagtagtgggtttggg
tttggtgccaccagtggcacatcaaacagcctttttggaagcaccaacactggaggtgga
ggattgttttcccagcagaataatgcctttggtgccaacaaaccagccacttttggcact
ttcggtaccagcaccagtagcggtggattattcgggacaaccaacacaacatccaatcct
tttggaggaacatcaggctctttgtttgggtcatcaaatttcactgctgctccccctggc
acaacaatcaaattcaatccaccaactgggagtgacacaatggtaaaaggaggtgtgaca
accagcatcaacaccaaacaccagtgtatcactgccatgaaggaatacgagaacaaatcc
ttagaggaattaaggcttgaggattatcaggcaggaaggaagggtccttccaaccccatg
gcagctggcacaggtggtctctttggagcggcagccacagctactcccagtactggcact
ggactttttggaccctcaactccaaacactggcttcagcttcggccagaacaagacctca
tttggcacaagcactgggggctttggtacaaccacaggaagtttgtttggccagccgcag
cagcagcagcaacaacagcagcaaggttccagtcttttcaaaccatttggttcagctacc
accacccaaaataacactttctcctttggcaacagcagcagcatggggctgtttggcaac
acagctgcctctcaggctggaggactgtttggaaacactaacacaagtactgccacagga
tttggcacaggaattttcggccaaactaacactggctttgggaatgtgggtacacaggtg
acttctggagaggctacaactgctccaccaccaacaacaaacaccaccattgcaacatcc
actggaacattcacaaataagttagcaaataagcctacactcactctaggggctaacacg
aacacctcaacctttggatttggtgcaactggtactggtgggggtctctttgggaacaaa
actgctacgacaggcctgggaacaggactgggaactggctttggaggagctgtaggaact
ggccagacatcattgtttgggaacaaccagaaagctgggctccaccctaggtcactgggc
accttcgggactggaggcttcaacactggagccaacactctgaattttggtgctcctcaa
cagcctgttgctctgactgaccccaatgcatcagctgcgcagcaggctgtcctccaacag
cagatcaatgcattggcctattctccttttggagactcacccctcttcagaaatccactg
tcagacccaaagaagaaggaagagcgtctaaagcccacaaatccagctgcccagaaagcc
ctgactacccctactcagtataaactgacccctcgtcctgccacccgtgttcgtcccaaa
gcactgtcctcatcaggctcctccaaatctcagctctttgatggacttgatgatgatgaa
ccctctcttaacaatggagccttcatgcctaggaagagcataaagaagcttgttttgaag
aatctgaataatagcagtctgtataacagccctgtgaacagagaggctgatgacttggcc
tccccttcagaatacccacaaaatgggctcagtctgagtatggatggagagaccagagaa
gtaactgtggagagaagtggggaggatgatctggaggtctccaagttctacacaaacccg
atcaccaaaccaattccacacgcccagccgagccccttgctacaggacacaatctcagag
ttcaacatgcggggaactgccagtcatcgcaatggcctggaggccagcagtgaggacatc
tcgctggcagaggattctattcaggaggagcgagatgaggagctggaggctcagaaacct
cctcacccagctggtatagttcttacccgtgtgggctactacaccatcccatcaatggaa
gagctaggaaggatgttgaatgagaatggggagtgtattgtggagaacttcacggtcggc
aggaaaggctatggatcagttttcttctctggtgaggtgaatctcaccaacatgaacctg
gatgagattgtgcacttcaggcgtaaggaaataatcgtgtaccctaatgacaaagacaag
cctcctgttggagagggactaaacagacgtgccgaggtgactctagatggtgtgtggccc
aatgacaagacaacatgctctcagattaagagtccagagaggctgactgagatgaactac
gagggtcgacttgaggcagcctcgcgtaaacagggtgcccgcttcttggaataccgtcct
gaaactggctcctgggtctttgaggtggcccacttctcaaagtacggactccaggaatct
gatgaagaagaggaagctccccccaccaagcttgaactgaagaagctgaagacaggtgtt
ccacctgtgatcccacagcttccactgacccagcagcagatgtcaccacaggctcagagc
acagcagttcttgagctgctcagccatgtgtcagagttggacagtgacatggctgacatt
actcaagagcacccagcagacagtgttttgggtgagggggatggaaagaggactctggag
gagaataagctgagatctgagactcctgccgagcgcaagcctgtgtctgcatcaagtcag
attgcttcctcaatgggcatcaaccctcataccttacaggcctctctctttgcagaggat
gatgaatgtgatttgtttcaagagcatggttcttcaaagctcatacaggatgtggcttcc
cctgaagttttgctttctggagctggtcggcaatcaattggagcccttttacaaaccaag
ttcaactcaggaggaggacttttttcccagttgccagaggctccttttagaggaatacct
cagaagcttagcaagtcactagcatcagaatctccatggccatcattgggtccttccttc
ctgttgccggcccctcccccagaacctactatttgaactgtggggacccgcaggctaggg
gggccagtacctctggaaagctccataactctaggaaaaggccgtctgctaatggatgct
gctttgttcagagggcgatctttcagagtgggctggggtcccaactggacactggtgcac
tgtggagatcaacttagtgtcacagaggcaatgaaggagcagtcggcagagatcatggga
tttggcttcttacccaaacctaccaaaagcaaaccgatcactgaaagtccatttaaagtg
catatagagcaggtggttggcctgaagcccaaacagtcagcagaaagccttgctttatat
cacaaaccactggagattggtctaaagcacagcacaatcaacatggagcattcctgtccc
ttcatccagccagcaaaaggagtggatgctctgcatggttatgcagaatggattgtagag
gtcaacaaagatataggaggaggggatgctggtctggcccattggcgccaagtttggact
ttgtgtgctgctctttttggtcatttggatgacctggatgtggagactgagcaatactca
gactaccagcagcagcttgagaggcgaaggagcttctcgcactggctctctgagtgtgcg
gctgaatgcattgaggaggaggtgggccgagcccttcagcgcaaccattctgaggccata
ttcagttaccttacctgccactgcataagcaaagcctgcaaactgtcccagaagagtggg
gaccatcgtctggctctgttgctgtcacaggctttgggctctcagttttgtagagatcta
ttggctctacagctcagtgactggaacagcatgcagacctactcctttatagaggaggag
aggctgcaaatctttgctttgcttgcaggcaaaccagtgtggcagtcaacagacggctgt
ataaacgtgtgctctgagcttgattggaagcggtgtgttgcagttcatctctggtacatg
atgcctcctactgcatctgtagctgacatcctttccaaatacgaatctgcatttcagggt
tcagaggaagtgaaaagttatgcttgccctcctttacctccttacatagatgaactcgag
ttattgggtttggatgaagagatggatgagactgaatccaaaaagccactctatgacatc
tgcttccacctgctcaaactttacagtgacaggcattatagcctacaacagctacttgat
cccagcacattaactgctgatcatctggactaccggctgagctggcacctgtggaacgta
ttgcaagctcttaactacaaccacctgtccaccccatgccagggcttgctgcatgccagc
tatgctgcccagcttgagagtgtgggattatgggagaaggctatcttcgtgctgctgcac
atacctgactctgggcgtagagagagtgcagtgagagagatgatcaacttgcattgctcc
cttgaggagacggaagagtcaatggaaaaagagcagtttctcacagaaaagttgctgatc
cccattcagtggatccatcaggccaaggcaatccgtgcttgtagagagggagacaaacgt
agtgaagctttgcacctttacaaggctggccactggaatcactgccaacggcttgtcatc
cagcaccttgcctcagactgcatcattaacgataatcataagtaccttctggaattccta
gaggggttagcagtgccagagcgcagtgttaagattcaggactgggacatatctggacga
gtctatcttgattacatccatgtcattcagacgctgcaggacatccagcagatggaaagc
ccaggttatgagctggagcgactgcatacggaggtgacgtcgctttgcagtagaatagag
cgcctcccctgctccaaagctaaagaccgacttgcacaatcagagatggccaaatgtgtc
gctaacatccttcgggtggtcttgagtctccagcaaggtggtgaaggcaccccagatccc
cgacacatccctctttgccagcttgctccatacattggacgtctaccactgccagaggac
tatgctttagaggaactccgcagccttactcagtcatacctgcaagagtatgttatcagt
cactga
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