KEGG   Cyprinus carpio (common carp): 109064648
Entry
109064648         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03013  Nucleocytoplasmic transport
ccar04141  Protein processing in endoplasmic reticulum
ccar04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109064648
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109064648
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    109064648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109064648
   04131 Membrane trafficking [BR:ccar04131]
    109064648
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109064648
Membrane trafficking [BR:ccar04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    109064648
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    109064648
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    109064648
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_Vps41
Other DBs
NCBI-GeneID: 109064648
NCBI-ProteinID: XP_018937229
Ensembl: ENSCCRG00000052518
UniProt: A0A9Q9ZE53
LinkDB
Position
B22:30394753..30404008
AA seq 301 aa
MDFFCCCLATCSSDRSVKIFDVKNGGQILVADLRGHEGPVWQVVSWSHHVWGNIVVLFLX
EGGVIMWGGERGMWEDVCVYRGRVFSVNSVCWGPYDFGLFLACGSSDGAISVLTCSGDGH
WDIKKINNAHTIGCNAVSWAPAVVPGSLIEQPTGQKPNYIKRFVSGGCDNLVKLWKEEDG
QWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVFIWTCDDPAGNTWTAKLLHK
FNDVVWHVSWSITGNILAVSGGDNKVTLWKESVDGQWACISDVNKGQGAVTSITDNQQNE
Q
NT seq 906 nt   +upstreamnt  +downstreamnt
atggattttttttgttgttgtctggccacctgctcctctgatcgctctgtgaagatcttt
gacgtcaaaaacggagggcagatcctcgtggctgatctgaggggtcatgagggtccggtg
tggcaggtggtgtcgtggtctcaccatgtgtggggaaatattgtggtcttgttcttatga
gaggggggtgttattatgtgggggggggagaggggcatgtgggaagatgtgtgtgtatac
aggggacgagtcttctccgtgaactctgtttgctggggaccgtatgacttcggcttgttt
ctggcctgtggcagctcagacggtgccatttcagtgttgacctgctctggagatggacac
tgggatattaagaagatcaacaatgcacatacaatcggctgtaacgctgtgagttgggcc
ccagctgttgtcccagggagtcttattgagcagccaacaggacagaagcccaactacatc
aagagatttgtgtctgggggctgtgacaatctggtcaagctgtggaaagaagaggacggc
cagtggaaagaggatcagaagctggaggcgcacagtgattgggtgagagatgttggctgg
gctccttccataggtctgccgaccagcacaatcgccagctgctcacaggatggtcgtgtg
tttatctggacgtgtgatgacccagccggcaacacctggacggccaaacttctgcacaaa
ttcaatgatgtggtgtggcacgtgagctggtccatcacaggaaacatcctggctgtgtca
ggaggagacaacaaagtgaccctgtggaaggagtcagtggacggacagtgggcttgtatc
agtgacgtcaacaaaggccagggggccgtgacctccatcacagacaaccaacagaacgag
cagtga

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