Cyprinus carpio (common carp): 109065363
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Entry
109065363 CDS
T05134
Name
(RefSeq) histone deacetylase 6-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccar01009
]
109065363
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109065363
04131 Membrane trafficking [BR:
ccar04131
]
109065363
03036 Chromosome and associated proteins [BR:
ccar03036
]
109065363
Enzymes [BR:
ccar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
109065363
Protein phosphatases and associated proteins [BR:
ccar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109065363
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
109065363
Membrane trafficking [BR:
ccar04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
109065363
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
109065363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
109065363
NCBI-ProteinID:
XP_042585254
Ensembl:
ENSCCRG00000040806
UniProt:
A0A9Q9WKW3
LinkDB
All DBs
Position
B8:complement(4903652..4917027)
Genome browser
AA seq
1105 aa
AA seq
DB search
MQCLAVFCSFLNVRCGSQCFIWIPVLGCVQISLKDLCALQRENNNPNHKKNLQEARRKGR
MDRSKEEEEMSNELQNLDVRGKTKATGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEM
LETEGLLGRCVRVEARAVSENELLLVHTKEYVELMKSSQKMTEDELKTLADKYDSVFLHP
EFFTCACLAVGSVLQLVDKVMTSQLRNGFSVSRPPGHHAHADKMNGYCMFNHLAIAARYA
QKQHGVKRVLIVDWDVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSG
AGQGYNINLPWNKIGMEDGDYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRV
SPQCFSILTHMLKGVAQGRLVLALEGGYNLQSIAEGVCASVSSLLGDPCPHLISPGAPSE
SALKSISKTISALYPFWKSLQTFEGGPLFDVVVLSAMLFACVKASSLITGLVYDQRMMLH
HNMWDGHHPELPQRISRIFCQHEELGLLSRCLRIPARLATEEELALCHSSEHISNIKSTE
HMKPRDLHRLGNDYNSIYICNESYTCALMAAGSCFNSVQAILTGQVRNGVAIVRPPGHHA
EKDTACGFCFFNTAALTARYAQCITHKSLRVLILDWDVHHGNGTQHIFEEDDSVLYISLH
RYEDGTFFPSSEDANYDKVGQGKGRGYNVNIPWNGGKMGDPEYLAAFHHIVMPIAREFAP
ELVLVSAGFDAARGDPLGGYQVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMS
MCTSMLLGDSPPPLDHLPPPKTSATVTINNVLRALAPFWSSLRIQIPESLRLALPSPKAK
GKRASAGRGKKSPRQSTPAQSPGQTLQHLEQSGLDELSKDLLSLNLNTSTSSNPSPASVP
IGGARRKVKPTPQRDSAGRESDSPLKPKSEKARAGDDTHAEITTDRTIPESVVTGSSAAV
DGQENSVLEAAGGQATMVSVFEVFGAQATDLDTMYVVDTLPWCPHLESVRPVPAGGIDVF
LPCEECGGDTENWICLFCYKVLCGRYVKQHMVTHGQESGHPMVLSFADHSVWCYACESYV
HNKVLHEAKNAAHLMKFGEEIPPFN
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgtcttgctgtgttttgctcattcttaaatgtcagatgtgggagccagtgcttt
atttggattcctgttttaggctgcgtgcaaatctccctaaaagacctttgtgctctccag
agagaaaacaacaatccaaaccataagaagaatttacaggaggcgcggaggaagggcaga
atggatcggagcaaagaggaggaagagatgagcaatgagctccaaaacttggatgttcgt
ggtaagactaaagcaacaggaacaggtcttgtctacgtagatgcctttactcgctttcac
tgcctctgggatgccagtcacccggagtgtccagcgagagtgagcactgtgatggagatg
ctggagacggaaggtctgctgggacgctgtgtacgagtagaggccagagctgtgtcagaa
aatgagctgttactcgttcatacgaaggagtatgtagagctgatgaaatcctctcagaag
atgacagaggacgagctgaagactctagctgataaatatgactctgtcttcctgcatcct
gaatttttcacctgtgcctgtctggcggtgggatcagttctccagctggtggataaggtg
atgacatcgcagctgcgtaacggcttctccgtcagcagacctcctggtcaccacgctcac
gcagataagatgaacggctactgtatgtttaaccatctggccatagcagcgcgctacgct
cagaaacagcatggagttaaacgagttctaattgtggattgggatgtgcatcacggacag
ggaatccagtatatttttgaagaggatcccagtgtgctgtatttctcagtgcacagatat
gaagacggatcgttctggccgcacctcaaggagtctgacagcagttcagtgggttcagga
gcaggacagggctataatatcaacctgccctggaacaagatagggatggaggatggagat
tacgtcacagctttccagcagctactcctgcctgtggcgtatgagttccagcctcagctg
gtgttagtggcggccggatttgactctgtgattggtgacccaaagggtgagatgcgagtg
agtccacagtgcttctccatcctgacccacatgctgaaaggtgtagctcagggacgactt
gtgctggctcttgagggtggatataacctccagtccatagcggagggtgtttgtgctagt
gtgagttcactgctgggtgacccttgccctcatctgatctctcccggtgctccgagcgaa
agtgccctgaagtccatctcaaagaccatctcagccttgtatccattttggaagagcctt
cagacgtttgagggtggtcctctttttgatgtggttgtcctgtctgctatgttgtttgcc
tgcgtgaaggcttcctctctgatcactggactagtttatgaccagagaatgatgcttcat
cacaacatgtgggatggtcatcatcctgagctccctcagagaatttcacgcatcttttgc
cagcatgaggagttgggtctgctgtcccgttgccttcggataccagctcgcctagcaaca
gaagaagagctggcactctgtcacagttctgagcacataagcaatataaagagtacagag
cacatgaaacccagagatctgcaccgactgggaaacgattacaactccatctacatctgt
aatgagagctatacctgcgccctgatggctgctgggtcgtgttttaactccgtacaggcc
atactcacaggccaggtgagaaacggtgtggccatagtccgtcctcctggtcaccatgca
gagaaagacacagcttgtggtttctgtttctttaatacggctgctttgaccgcacgctac
gctcagtgcatcactcacaagtccctgcgcgtcctcatcctcgattgggatgttcatcat
ggaaacggcacacagcacatctttgaggaggatgacagtgttctgtacatctctctgcat
cgctacgaagatgggacattcttccccagttcggaggatgctaactatgataaggtgggg
caggggaaaggcagaggatataatgtcaacatcccctggaatggaggaaagatgggagac
ccagaatacttggcggctttccatcacatagtgatgccgatagccagagagtttgcccca
gagctggtgctggtgtctgctgggtttgatgcagcacgaggtgatccgttaggagggtat
caggtgaccccagagggctacgcccacctcacccatcagttaatgagcctggctgcagga
agagtgctagtcatactggagggaggatataacctcacctccatctctgagtcaatgtcc
atgtgcaccagtatgttgctgggagactctcctccacctctagaccatctgccacctcca
aagaccagtgccactgtcacgattaacaatgtcctgcgtgctctcgcccccttctggagc
tccctgagaatacagattccagagtcacttcgtttggctttgccatctcctaaagcaaaa
ggcaagcgggcatcggcgggcaggggcaagaaatctcctcgccagtccacccctgcccaa
agtcctggacagacactgcagcatcttgagcagtccggccttgatgagctcagtaaggac
ctgctctctctgaatctcaacacgagtacctcatctaaccccagcccagcttcagtacca
attggaggagccagacggaaggtgaagcccaccccacagagggattcagcaggccgggag
tcagattcacccctaaaacccaagtcagagaaagccagagctggagacgacacgcatgcg
gagattacgacagaccggacgatcccagagtctgtggtcactggaagttcagctgccgtg
gatggccaggagaactcggtgctggaggctgctggaggtcaagccactatggtgtcagtc
tttgaagtctttggagcacaagccacagatttggacacaatgtatgtggtggacacgttg
ccatggtgcccacacttggagtcagtgcgaccggtgcccgcaggtggcatcgatgtcttc
ctgccgtgtgaagagtgtggaggcgatacagaaaactggatctgcctcttctgctacaag
gtgctctgcgggcgttatgtgaagcagcacatggtgacccacgggcaggagtcgggtcac
cctatggtgctgagctttgctgaccactctgtctggtgctacgcttgtgagtcatacgtc
cacaacaaggtgctccacgaagccaaaaatgccgctcacctcatgaagttcggagaggag
attcctcctttcaactaa
DBGET
integrated database retrieval system
