Cyprinus carpio (common carp): 109065496
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Entry
109065496 CDS
T05134
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109065496 (pdzrn3a)
Enzymes [BR:
ccar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109065496 (pdzrn3a)
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109065496 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-TRAF
zf-C3HC4_3
Sina_ZnF
zf-RING_5
zf-C3HC4_4
zf-rbx1
Prok-RING_4
U-box
PDZ_Tricorn
zf-Nse
zf-ANAPC11
Lectin_N
Motif
Other DBs
NCBI-GeneID:
109065496
NCBI-ProteinID:
XP_042568788
Ensembl:
ENSCCRG00000044548
UniProt:
A0A9Q9VPG7
LinkDB
All DBs
Position
A23:7476281..7509020
Genome browser
AA seq
1041 aa
AA seq
DB search
MGFDLDRFEGPVDPDLICKLCGKVIEDPLSTPCGHVFCAACVLQWLAKVSTCPVQCQKIS
TKELNHVLPLKNLILKLDIKCDHRARGCNRVMKLQHLPEHAETCEFSPVRCGNEGCGAML
NLRDVASHMQERCEHRAVDFCKDGCGLALTLKERSEEDHSCLQALRTHSGLLQTKVLSLE
KELKRQSLSFSKRERSLFSKLSALHCELHITALTFQKKITEYKSRIDALSSSWVPLDKGE
ETRSLKVTLHRTSGSLGFSIIGGRLCGEPEQPWDFSDGIYVSKIVENGAADKAGLHVHDR
IVEVNGRTLSFATHDQAVEAFQTAKDPIEVQVLRRMAQKTCRTLKPTRGMDNSTQTNITL
KTLQQIETLANLASPSTPCMALLDSFHSPSQYQLASCDLAYPLDFHDGVQKDIESGGLEY
EEVDLQRKTTQDKLGLKLCYKTDDEKSAMYISEIDPEGIAAKDGRVQEGDQIIQINGMDI
QSHEAAVTLLTKVESKNVTLLVARPESQDVGWLEEDRYNLDDLHMGTLEQQHHKVKEFPA
SMLQQSTNEEDGGTTDTATLLSNQHEKDSGVGRTDESTRNDESSEQDILGDDQNSLCDTL
PENHKKYNNNPDTVESGDMHLSNDSFLSVDNGDSGNFFGIPGTACEHFQKLLELKSLVNG
NCLQGFLEHDATLFGKERSVDCEDQEIQMLNEELLNIELECLSIIQAHRLQAEVGDLQAK
NPSTEHFIEQVHQDLINNHVDNEGSTSAYNTGESCWSLRPALESDSPNSQRMVAGDKGKG
SPMHRRNSTAGCSKHHLSPIQEISPTKSLPGDPEVINHGKGKQSKKKNPRKSLLTSLRHS
SYKNTYIPAHAQHYQSYMQLIQQKSAVEYAQSQASLASLCKNAETTPTESKPKTGWKVKI
RSDGTRYITKRPIRDQLLKERALHIREERCSATTDDDAASELKLGRYWNKEERKQHAARA
KEQRQRRELMKQCRIESKEQAGAMDNKKEPDIIQLSRKKMMKRRNKKIFDNWMTIQELLT
HGTMSTDDKRLYNSFLSVTTV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgatctagaccgtttcgaaggtcccgtggatccggacttgatctgtaaactg
tgtgggaaagttatagaagatcctctcagcactccgtgcggacatgtcttctgcgccgcg
tgcgtgctccagtggctcgccaaagtcagcacctgccctgtccagtgccagaagatctcc
accaaagagctgaaccacgtcctgcccctaaaaaacctcattctcaagctggacatcaaa
tgcgaccaccgtgcacgaggctgcaaccgggtgatgaagctccagcatctgccagagcac
gcggagacctgcgaattctctccggtgagatgcgggaatgaaggatgcggcgctatgctc
aacttgagggatgtggcttcgcacatgcaggagagatgcgagcacagggcggtggatttc
tgtaaggatggatgtggactcgcgctgaccctcaaggagaggtcggaggaggaccacagc
tgtctccaagctctcaggacacacagcggtctcctccaaaccaaagtgctgagtctggag
aaggagctgaagcgccagtcgctgagcttcagtaagagggagagatccctcttctccaaa
ctctccgcgctccactgcgagctgcacatcacagcgctcacatttcagaagaaaatcacc
gagtacaagagcaggattgacgcgctgtcaagcagctgggtgcctctcgataagggtgaa
gaaacaaggagcctcaaagtcacgctccacagaacatcaggatctcttggattcagtatc
attggaggaagattgtgtggggaaccagagcagccttgggatttcagtgatggcatctat
gtatccaagatagtggagaacggagcagctgacaaggctggactgcatgttcatgacagg
atcgttgaggtaaatggaagaaccctttctttcgccacccatgatcaagcagtagaggct
ttccaaactgccaaagaccctattgaggttcaggtactgcgcaggatggcacaaaagact
tgcaggactcttaaaccaacccgaggaatggacaacagtactcagaccaacattacgctt
aaaactttgcaacaaatagagactttggccaacttggcatcaccttcaacaccatgtatg
gctttgctggacagtttccattcaccctcacagtatcaattggcaagttgtgacttagct
taccccttggacttccatgatggtgtacagaaagacattgagagtggaggactggaatat
gaggaggtggatttgcagaggaaaaccactcaggataagcttggcctgaagttatgttac
aagacggatgacgagaagtctgccatgtatattagcgagattgatccagaaggaattgct
gcaaaagatggcagagttcaggaaggagaccaaattatccagatcaatggaatggacatc
cagagccatgaagcggccgtgacacttctgaccaaggtggagagtaagaatgtgaccctt
ctagtggctcgaccagaaagtcaggatgttggctggttggaggaagatagatacaactta
gatgatttgcacatgggcacactggagcagcaacatcacaaggtcaaggagttccccgca
agtatgctgcagcagagcacaaatgaagaagatggaggcactacagatacagctacttta
ctatccaaccagcatgagaaagacagcggcgtaggccgcacagatgaaagcactcgtaat
gatgaaagctcagagcaggacatcttgggggatgaccagaattccctctgtgacactctc
ccagaaaaccacaagaagtacaacaataatccggacactgttgaaagtggggacatgcac
ttaagcaatgactcttttctttcagttgacaatggagacagtggaaacttctttggtata
cctggcacggcatgtgaacatttccagaaactgcttgaacttaaatctctggtgaatggt
aactgtcttcagggatttctggagcacgatgccacactatttggcaaagagcgtagtgtt
gactgtgaagatcaagagattcagatgcttaatgaggagttactgaacattgagcttgag
tgcctgagtatcatacaagcacacaggcttcaggctgaagttggtgatctgcaagccaaa
aatcctagtacagagcactttattgaacaagtccatcaggacctcatcaataaccacgtg
gacaatgaaggctctactagtgcttacaacactggagagagctgttggagcttacgtcct
gctctggagtcagattctcctaactcccaaaggatggttgctggagacaagggtaaaggt
tctcccatgcatagacgcaactcaacagcaggatgctccaaacatcacctttctcccatt
caagagatcagtcccaccaagagtttacctggagatccagaggtcataaatcatgggaaa
gggaagcagagtaagaaaaagaacccaaggaagagtcttttgacttccttacgtcattcc
tcatacaagaacacctacatcccagctcatgcacaacattatcaaagctacatgcaactt
atccagcagaagtcagctgtggaatatgcccagagtcaagccagcttagccagcctgtgc
aagaatgcagaaaccacccccactgagtccaagcccaaaacggggtggaaggtaaagatc
cgtagcgatggaacaagatacatcaccaaaaggcccatcagggaccagcttctgaaggag
cgagctctacacattcgagaagaacgctgcagtgcaactacagatgacgatgcagcaagc
gaactaaaactgggtcgatactggaacaaagaggagcgcaaacagcatgcggcacgagcc
aaagaacagcgtcagcggcgggagctcatgaagcagtgccgcatagagagcaaagaacaa
gcaggagcaatggacaacaagaaggagcctgatattatccagcttagccgtaaaaagatg
atgaagaggaggaacaagaagatatttgacaactggatgaccattcaggagctgctgaca
catggcacaatgtccacagatgataaaagactatacaattcctttctttctgtgactaca
gtgtaa
DBGET
integrated database retrieval system
