Cyprinus carpio (common carp): 109067075
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Entry
109067075 CDS
T05134
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109067075
09124 Replication and repair
03420 Nucleotide excision repair
109067075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109067075
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109067075
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109067075
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109067075
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109067075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
RNA_pol_Rpb1_7
VasI
Motif
Other DBs
NCBI-GeneID:
109067075
NCBI-ProteinID:
XP_042591358
Ensembl:
ENSCCRG00000033319
UniProt:
A0A8C1ZSF5
LinkDB
All DBs
Position
B12:12912684..12926569
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFRFDCTNDRALRRTLQEDVVKDVLTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPARVVEGVHELSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtccgttactgaagggggcatcaag
taccctgagaccacagaaggagggcgccctaaactggggggacttatggaccctcggcaa
ggggtaattgaaaggtcaggcagatgccagacgtgtgcaggtaacatgactgagtgcccc
ggtcattttggtcacattgagctggcaaagccagtctttcatgttggattcatcacaaag
atcatgaaggtcctccgatgtgtctgcttcttctgttcaaaactgcttgtggacgcgaac
aatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccacgtaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagaccgaagaagacctcaccaaagagaagggtcatgga
ggctgtggcaggtaccagccacgtatccgtcgctctggcctggagctgtatgctgagtgg
aagcacgtgaacgaagactcgcaggaaaagaagattcttctcagccctgaacgtgtgcat
gagatcttcaaacgtatttcggatgaagaggacatgatcttgggcatggaccccaaatat
tcccgtcctgagtggatgattgtcactgtgttgcccgtgcctcctcttgctgtgagacca
gctgtggtcatgcagggctctgctagaaaccaggatgatttaacacacaagttggctgac
attgtgaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagcgcatgtt
atagcagaggatgtcaagctgcttcagttccacgtggccaccatggtagacaatgaactg
ccaggtctccctagggcaatgcaaaagtctggtcgtccactaaaatctatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagatttctcc
gcccgaactgtcatcacgccagaccccaacctgcaaatcgaccaggtgggcgtcccccgt
tccatcgccgcaaacatgaccttccctgagattgtcacaccctttaacattgacagactc
caagagcttgtaaggagaggtaacagtcagtatcctggagccaaatatatcatccgagac
aacggggacagaattgacctgcgattccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagttgaacgacacatgtgtgatggagacattattgtgttcaacagacagcct
acgctgcacaaaatgtctatgatgggccacagagtgcgaatcttgccttggtcaacgttt
cgactcaacctcagtgtgacaaccccatacaatgctgactttgatggcgatgagatgaac
ctgcacttgccacagtccttggagacccgtgctgagatccaagagctggctatggtgcct
cgtatgattgtcacaccacagtctaacagacccgtcatgggtattgtgcaggacacactg
acagctgtgcgcaagttcaccaagagagatgtcttcttggagaggggtgaggtgatgaac
ctcctcatgtttctctccacatgggacggcaaagtgccccaacctgctatcttgaagcct
cgacctctctggactggcaaacagatcttcagcttgatcatccctgggcacattaatgcc
atccgcacacacagcactcaccccgatgaagaggacagcggcccttacaaacacatctcc
cctggagacactaaggtgattgtggagaacggtgagctgatcatggggatcctgtgtaag
aagtcattgggaacctccgctggctctcttgtccatatctcataccttgagatgggccat
gacatcacacgactcttctattctaacatccagactgttgtcaacaactggctgcttatt
gagggtcactctattggtattggagactccattgccgataaggcgacatatcaggacatt
cagaacacgattaagaaagccaaacaggatgtgatagaggtcattgagaaagcccacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgagacaagactggatcctctgcccagaagtcattgtctgag
tacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtagtggggcagcagaacgttgagggtaagcgaatccccttcggtttc
aagcaccgcactctccctcacttcattaaagatgattatggtccagagagtagaggcttc
gtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctgttatggtaaagtatgatgctacagtcagaaactcc
attaaccaagttgtccagctgaggtatggagaggatggtctggcaggagaggctgtggag
ttccagaacatggctacccttaagccatcccacaaagcctttgagaagaagtttaggttt
gactgcaccaatgaccgagctctccgccgcactctacaggaagatgtggtgaaagatgtg
ttgaccaatgcccatgtccagagtgctctagagagagagtttgagaagatgaaggaagac
cgagagatcttgagagccattttccccacaggcgacagcaaggtggtactaccgtgcaat
ttggccagaatgatctggaatgctcagaagattttccgcatcaatcctcgaacaccaact
gacctcaacccagcacgagtagtggaaggagttcatgagttgagtaagaagctggtgatc
gtaaatggtgaagaccagttaagcaggcaagcccaggagaatgccactctgctattcaac
atccacctgcgctccaccctgtgctccaagcgaatgaccgaggagttccgtcttagcaca
gaggcttttgattggctgctgggagagattgagaccaaatttaaccagtccattgctcat
cctggtgagatggtaggtgctctggctgcccagtctctgggagagcctgctactcagatg
accctgaatacattccactacgccggtgtgtccgccaaaaacgtcactcttggtgtgcct
cgactcaaagagcttatcaacatctccaagcgaccaaagaccccctccttgaccgtattt
cttctgggccaagcggcccgtgacgcagagagggccaaagatatcctgtgtcggttggag
cacacaacactgcgcaaggtcactgccaacacagccatttattatgaccccaaccctcag
aacactgtggtgactgaggatcaggagtgggtcaacgtgtactatgagatgcctgacttc
gatgtgacccgcatttcaccctggctgctgcgtatcgagcttgaccgcaaacacatgact
gaccgtaagctgacaatggagcaaatcgcagaaaagatcaatgcaggatttggtgatgac
cttaactgcatcttcaatgatgacaatgctgagaaactggttttgcgaatccgcatcatg
aatagtgacgagaataagtttcaagaggatgaggaggtagtggataagatggatgacgat
gtcttccttcgctgcattgaatcgaacatgctgacagacatgacactgcaaggcattgag
cagatcagcaaggtatacatgcatctaccacagactgacaacaagaaaaaaatcatcatc
acagaagagggagagtttaaagctttgcaagagtggatcctggaaactgatggagtcagc
ctcatgagggtcctcagtgagaaggatgtggaccctgtcagaaccacctccaatgacatt
gtggagattttcactgttcttggtattgaggctgtgcgtaaggctctggaaagagagttg
taccatgtcatctctttcgacggttcttacgttaactaccgccatcttgctttgctgtgt
gacacgatgacctgcagaggtcacttgatggccatcactcgtcacggtatcaacaggcag
gacactggaccgctaatgaagtgctcttttgaagagacggtggatgtgttgatggaagcc
tcatctcatggtgaatgtgacccaatgaaaggagtgtctgagaatatcatgctggggcag
ctggctcctgcaggcactggttgctttgacctgctgttggatgctgagaagtgcaagtat
ggtatggagattcccaccaacatccctggtatcagtgttgcaggacccacgggtatgttc
tttggctctgcccccagccccatgagtggcatgtctcctgccatgactccctggaacaca
ggagccactcctgcatatggtgcttggtctcccagtgttggaagcggaatgacaccaggt
gctgcaggcttctctcccagcgctgcgtctgatgccagcggcttctcacctggttattct
cctgcctggtctcctactcctggttctcctggatcccctggaccagctagcccttatatc
ccctcaccaggagccttgtctccaaattactctccaacttctcctgcctacgagcctcgc
tctcctggtggatacaccccacagagccctggatactctccgacctctccgtcatactct
ccgacttcaccatcttattctcccaccagtccaaactacagccccacatctccgtcctac
tcgcccacatcaccctcctactctccaacttcgccgtcttattctccaacatctccaagc
tactctccgacttcaccttcttactctccgacttcaccgtcttactccccgacttcacca
tcctactcgccaacatcccccagctatagcccaacgtcccccagctacagcccaacttca
ccaagttacagccccacgtctccgtcgtattccccaacttctccatcttattccccgacc
tccccgtcttactctcccacttctccaagctactctccaacctccccgtcctattcccca
acatctccgagctacagtcccacttcgcccaactacacgcccacctcaccaagttactct
ccgacctctccatcttacagccccacctcaccttcctactcccccacctctcccaattat
accccgaccagtcccaattactctcccacatctccttcttactccccaacttcgccgtcc
tactctccatccagtcctcgttacaccccgcagtctcccacctacaccccaagctcgcct
tcttacagcccaagttctccatcctactcccccacctccccaaaatacacccccacctcc
ccctcctacagtcccagctctcccgaatataccccaacgtcccccaaatattcccccact
tccccgaagtactctcccacttcgcccaaatacagtcccacttctccgacctactcccca
actactcccaagtacagccccacttcccctacttattctccaacctctcctacctacacc
ccaaccagccccaaatattcccccacctctccgacttactctccaacgtctccaaaatac
tcacccacatcccctacctactctccaactagtccgaagggctccacctacagccccact
tctcccggctacagccccacctctccaacctacagcccagccatcagccctgatgacagt
gatgaagaaaataattaa
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integrated database retrieval system
